Showing : Rankprod • reset
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Shifted volcano plot after RankProd
rankp RankProd
22 months ago Alessia • 0
1
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3
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1.3k
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How can I run a paired RankProd analysis in R?
RankProd paired RNAseq R
updated 5.4 years ago by 68k • written 5.4 years ago by • 0
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RankProd RP function length error
rankprod rp gr2
updated 6.6 years ago by 43k • written 6.6 years ago by • 0
3
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2
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1.4k
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RankProd throws "is.infinite(data)" error for type "S4" for differential expression analysis
rankprod limma affy bioconductor microarray
updated 7.7 years ago by 68k • written 7.7 years ago by ▴ 20
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7
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1.9k
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RankProd crashing - stability issues?
rankprod crash
7.7 years ago bhgyu ▴ 30
4
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6
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2.8k
views
Bioconductor open source policy
licenses rankprod
updated 7.7 years ago by 68k • written 7.7 years ago by • 0
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Dual channel microarray statistics - Rankproducts did not calculate average FC in log scale.
Dual channel microarray Rankprod
8.1 years ago ggyu1215 • 0
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979
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How does specifying an origin increase the power when using RPadvance?
rankprod microarray bioconductor
8.7 years ago johnanthonyholtjr • 0
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1.1k
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Regarding the package RankProd
microarray rankprod
8.9 years ago sancharisircar24 • 0
1
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1.2k
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Problem using RankProd
rankprod
updated 9.4 years ago by 68k • written 9.4 years ago by • 0
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1.4k
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RankProd: simultaneously up and down regulated gene
RankProd differential gene expression
9.5 years ago horcsct ▴ 10
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1.3k
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Combine RankProd output Tables (up & down)
RankProd
9.5 years ago horcsct ▴ 10
0
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2.3k
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Error while running RankProd RPadvance from 2 origins - invalid 'row.names' length
rankprod microarray
9.7 years ago sumedharoy • 0
5
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2
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2.6k
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RankProd: Why are p-values=0?
rankprod p-value
updated 9.7 years ago by 68k • written 9.7 years ago by • 0
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0
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1.3k
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Possible implementation of two class paired Rank Products in r with package RankProd
RankProd pairedtest bioconductor biologicalreplicates
9.9 years ago svlachavas ▴ 840
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Can Rank-production be applied to test the condition's effects on treatments?
RankProd RankProd
10.6 years ago Guest User ★ 13k
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1.6k
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1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
Normalization probe limma RankProd Normalization probe limma RankProd
updated 10.8 years ago by ▴ 30 • written 10.8 years ago by 52k
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1
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1.9k
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1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
cdf RankProd cdf RankProd
updated 10.8 years ago by ▴ 30 • written 10.9 years ago by ▴ 190
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1.0k
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1. comparing chip Information in meta analysis / Rankprod and 2. two color normalization
RankProd RankProd
10.9 years ago Stefanie Busch ▴ 30
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2.5k
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GEOquerry and virtualArray
RankProd virtualArray RankProd virtualArray
updated 10.9 years ago by 68k • written 10.9 years ago by ▴ 30
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1.4k
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Rankprod- gene appearing in both up and down regulated lists?
RankProd RankProd
11.6 years ago Guest User ★ 13k
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0
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1.1k
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Comparing human and mouse expression directly with RankProd
RankProd RankProd
12.1 years ago Cornwell, Adam ▴ 110
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1.2k
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RankProd absurd results
qPCR RankProd qPCR RankProd
12.2 years ago Guest User ★ 13k
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1.2k
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RankProd analysis for Agilent Single Color array ??
limma RankProd limma RankProd
12.3 years ago Guest User ★ 13k
0
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0
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1.2k
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RankProd paired-sample analysis
RankProd RankProd
12.6 years ago Maider Muñoz ▴ 20
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0
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1.1k
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RankProd package paired-sample sesign
RankProd RankProd
12.6 years ago Maider Muñoz ▴ 20
0
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1
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1.3k
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meta-analysis with RankProd
RankProd RankProd
updated 13.1 years ago by ▴ 740 • written 13.1 years ago by ▴ 40
0
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1
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1.4k
views
Help needed with topGene function of RankProd package
RankProd RankProd
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ▴ 30
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2
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1.8k
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Missing values - metaArray, GeneMeta, RankProd, metahdep
RankProd GeneMeta metaArray RankProd GeneMeta metaArray
13.6 years ago boczniak767 ▴ 740
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984
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Gene IDs returned by RankProd topGene command
RankProd RankProd
15.0 years ago Blumenberg, Miroslav ▴ 30
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2
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1.6k
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Query related to topGene functionality in RankProd library.
Cancer probe RankProd Cancer probe RankProd
updated 15.3 years ago by ▴ 20 • written 15.3 years ago by ▴ 20
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0
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1.3k
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Query related to topGene functionality in RankProd library.
probe RankProd probe RankProd
15.3 years ago Rohan M ▴ 20
0
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1
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1.1k
views
Searching miRNA probe ids and annotating probe id lists
miRNA GO cdf probe affy RankProd miRNA GO cdf probe affy RankProd
updated 15.4 years ago by 21k • written 15.4 years ago by ▴ 10
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4
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1.7k
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use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
Annotation cdf limma RankProd Annotation cdf limma RankProd
updated 16.1 years ago by ▴ 70 • written 16.1 years ago by ▴ 190
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2
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1.6k
views
use of huex10stv2cdf_1.15.0.tar.gz and human exon array analysis
cdf limma RankProd cdf limma RankProd
updated 16.1 years ago by 68k • written 16.1 years ago by ▴ 70
0
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0
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1.1k
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Rank Products- breast cancer
Cancer RankProd Cancer RankProd
16.8 years ago Eleni Christodoulou ▴ 150
0
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3
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2.0k
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Error in RankProd package
limma RankProd limma RankProd
updated 18.0 years ago by ▴ 100 • written 18.0 years ago by ▴ 680
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0
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1.1k
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meaning of pfp in RankProd
RankProd RankProd
18.1 years ago Matthew McCormack ▴ 180
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1.2k
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help with RankProd plaase
GO Survival cdf genefilter multtest affy limma RankProd Category affycoretools GO cdf
18.3 years ago Kimpel, Mark W ▴ 890
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3
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1.6k
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Wilcoxon test [was loged data or not loged previous to use normalize.quantile]
Microarray limma RankProd Microarray limma RankProd
updated 19.9 years ago by ▴ 340 • written 19.9 years ago by 52k
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0
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1.1k
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A new package: RankProd
RankProd RankProd
20.0 years ago Fangxin Hong ▴ 810
41 results • Page 1 of 1
Recent ...
Replies
Comment: Using tximport for kallisto aligned recount2 data by ATpoint ★ 4.7k
recount 2 does not use kallisto, does it? And recount does offer genelevel counts, so what's the point?
Comment: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package by Yao Lipu • 0
Thank you for your help! Your explanation was very clear and really helped me solve my issue. I truly appreciate your time and effort!
Answer: Surprising behavior for DEXseq dispersion estimate plot? by Snow • 0
Interesting adaptation of DEXseq, Elijah! Seeing those dispersion estimates makes me think about optimizing slopes, just like in [Snow Ride…
Answer: library org.Hs.eg.db failing to install by James W. MacDonald 68k
It should just install. ``` > library(BiocManager) Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14 ucrt) W…
Comment: Surprising behavior for DEXseq dispersion estimate plot? by Elijah • 0
Thank you so much for your quick reply! I was worried if some underlying technical artifact or unusual behavior would be causing the patter…
Votes
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms
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