Showing : Rcurl • reset
19
votes
4
replies
6.3k
views
biomaRt no longer works with proxy after upgrade
biomart proxy rcurl
updated 10.2 years ago by ▴ 140 • written 10.2 years ago by ▴ 680
6
votes
5
replies
15k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 9.0 years ago by 25k • written 9.0 years ago by ▴ 10
3
votes
2
replies
7.3k
views
errors when installing cummeRbund package
Install cummerbund Rcurl xml
updated 11.3 years ago by 25k • written 11.3 years ago by ▴ 20
3
votes
6
replies
3.9k
views
function getAE from ArrayExpress needs update because EBI has switched to https
arrayexpress xml rcurl http EBI
updated 8.3 years ago by ★ 13k • written 8.3 years ago by ▴ 610
2
votes
13
replies
3.7k
views
SCAN.UPC: exception thrown when loading GEOQuery
scan.upc geoquery rcurl
11.0 years ago lep ▴ 90
2
votes
4
replies
11k
views
install RCurl in R
RCurl
10.5 years ago yueli7 ▴ 20
2
votes
8
replies
3.1k
views
BiomaRt and phytozome
biomaRT Rcurl phytozome
updated 6.7 years ago by ★ 6.6k • written 6.7 years ago by ▴ 20
0
votes
6
replies
3.6k
views
not able to install geoquery package
microarrays xml RCurl libxml2 libcurl
updated 8.9 years ago by 25k • written 8.9 years ago by • 0
8 results • Page 1 of 1
Recent ...
Replies
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
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