Bioconductor Rmarkdown

Showing : Rmarkdown • reset

votes

replies

16k

views

rmarkdown rstudio knitr

7.5 years ago Jon Bråte ▴ 250

votes

replies

2.0k

views

rmarkdown suppressWarning warning

updated 14 months ago by Mike Smith ★ 6.5k • written 2.4 years ago by Wolfgang Huber ★ 13k

votes

replies

3.6k

views

package development bioconductor rstudio rmarkdown vignettes

6.4 years ago clarisbaby • 0

votes

replies

1.7k

views

BiocWorkflowTools rmarkdown

updated 6.9 years ago by Andrzej Oleś ▴ 750 • written 6.9 years ago by Leonardo Collado Torres ★ 1.0k

votes

replies

3.1k

views

BiocStyle vignettes rmarkdown latex News

6.7 years ago Andrzej Oleś ▴ 750

votes

replies

3.4k

views

rmarkdown package updates

updated 7.7 years ago by James W. MacDonald 65k • written 7.7 years ago by tarek.mohamed ▴ 10

vote

1.1k

views

rmarkdown knitr

updated 5.2 years ago by Aaron Lun ★ 28k • written 5.2 years ago by Keith Hughitt ▴ 180

vote

replies

1.4k

views

BrowseSeqs DECIPHER notebook rmarkdown

updated 4.6 years ago by Erik Wright ▴ 150 • written 4.6 years ago by lauren.fitch • 0

vote

1.1k

views

ReportingTools RNA-Seq RMarkdown

updated 3.6 years ago by James W. MacDonald 65k • written 3.6 years ago by anthony.nash ▴ 20

votes

3.2k

views

biocstyle Rmarkdown Tutorial

6.8 years ago Wolfgang Huber ★ 13k

votes

replies

615

views

BiocWorkflowTools rmarkdown

3.9 years ago helucro ▴ 70

11 results • Page 1 of 1

Recent ...

Replies

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length