Bioconductor SCRNA

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920

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scRNAseq quickcluster scRNA scran

5 months ago ruba-mahmoud • 0

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702

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scrna scRNAseq

updated 7 months ago by Gabriella • 0 • written 14 months ago by sarah.jobbins • 0

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1.1k

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scRNAseq scrna paireddesign edgeR pseudobulking

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by garcia • 0

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428

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scRNA scRNAseq

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by Omer • 0

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689

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scran Normalization scRNA BatchEffect

16 months ago r_grau ▴ 10

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2.4k

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DropletUtils emptyDrops scRNA scRNAseq 10x

21 months ago Peter Hickey ▴ 740

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2.3k

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DESeq2 Scrna scRNAseq

2.8 years ago RDoc ▴ 10

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1.0k

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scRNAseq scRNA batchelor BatchEffect

updated 3.5 years ago by Aaron Lun ★ 28k • written 3.5 years ago by Adrien • 0

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1.8k

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scRNA zinbwave batch IntegratedData

updated 3.7 years ago by davide risso ▴ 950 • written 3.7 years ago by Assa Yeroslaviz ★ 1.5k

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1.7k

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Seurat scRNA debugging exceptions unit-test

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by moldach ▴ 20

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4.7k

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scRNA monocle packages Tutorial

4.7 years ago 444579004 • 0

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1.5k

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scrna scrnaseq differential gene expression

updated 6.6 years ago by davide risso ▴ 950 • written 6.6 years ago by d.depledge • 0

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903

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SCRNA

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by sumetha • 0

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4.2k

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MAST scRNA GSEA

updated 6.8 years ago by Andrew_McDavid ▴ 270 • written 6.8 years ago by siajunren • 0

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1.5k

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scater scrna

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by hrishi27n ▴ 20

15 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Thank you so much!

Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k

Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…

Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10

Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …

Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k

The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…

Comment: ChAMP installation issue by shepherl 3.9k

We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…

Votes

Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data

Comment: Ensembl plants at annotationHub?

how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Awards • All

Scholar to Mike Smith ★ 6.5k

Popular Question to mohammedtoufiq91 ▴ 10