Bioconductor SCRNA

Showing : SCRNA • reset

votes

4.6k

views

scRNA monocle packages Tutorial

4.7 years ago 444579004 • 0

votes

4.2k

views

MAST scRNA GSEA

updated 6.8 years ago by Andrew_McDavid ▴ 270 • written 6.8 years ago by siajunren • 0

votes

replies

2.3k

views

DropletUtils emptyDrops scRNA scRNAseq 10x

21 months ago • updated 20 months ago Peter Hickey ▴ 740

votes

replies

2.3k

views

DESeq2 Scrna scRNAseq

2.8 years ago RDoc ▴ 10

vote

replies

1.7k

views

scRNA zinbwave batch IntegratedData

updated 3.6 years ago by davide risso ▴ 950 • written 3.6 years ago by Assa Yeroslaviz ★ 1.5k

votes

replies

1.7k

views

Seurat scRNA debugging exceptions unit-test

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by moldach ▴ 20

vote

replies

1.5k

views

scrna scrnaseq differential gene expression

updated 6.5 years ago by davide risso ▴ 950 • written 6.5 years ago by d.depledge • 0

vote

replies

1.5k

views

scater scrna

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.3 years ago by hrishi27n ▴ 20

votes

replies

1.0k

views

scRNAseq scrna paireddesign edgeR pseudobulking

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by garcia • 0

vote

1.0k

views

scRNAseq scRNA batchelor BatchEffect

updated 3.5 years ago by Aaron Lun ★ 28k • written 3.5 years ago by Adrien • 0

votes

894

views

SCRNA

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by sumetha • 0

vote

replies

804

views

scRNAseq quickcluster scRNA scran

4 months ago ruba-mahmoud • 0

votes

replies

681

views

scrna scRNAseq

updated 6 months ago by Gabriella • 0 • written 14 months ago by sarah.jobbins • 0

vote

replies

669

views

scran Normalization scRNA BatchEffect

16 months ago r_grau ▴ 10

votes

418

views

scRNA scRNAseq

updated 9 months ago by ATpoint ★ 4.1k • written 9 months ago by Omer • 0

15 results • Page 1 of 1

Recent ...

Replies

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Votes

stuck on unimplemented type 'list' in 'EncodeElement'

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Awards • All