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SmallRNA
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0
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2
replies
1.2k
views
small RNAs quantification
smallrna
counts
7.6 years ago
ribioinfo
▴ 100
6
votes
7
replies
1.9k
views
Normalization for small non-coding RNA
TMM
deseq2
smallrna
rnaseq
updated 5.4 years ago by
António Miguel de Jesus Domingues
▴ 510 • written 5.4 years ago by
Konstantinos Yeles
▴ 80
0
votes
1
reply
1.8k
views
Bioconductor Digest, Vol 115, Issue 22
Transcription
Sequencing
miRNA
SmallRNA
Annotation
Normalization
GO
Cancer
Organism
edgeR
updated 11.6 years ago by
Steve Lianoglou
★ 13k • written 11.6 years ago by
Weng Khong LIM
▴ 10
0
votes
3
replies
1.6k
views
finding differential expression pattern between paired columns of data frame.
Sequencing
SmallRNA
Microarray
limma
Sequencing
SmallRNA
Microarray
limma
updated 9.8 years ago by
James W. MacDonald
65k • written 9.7 years ago by
Jakub Stanislaw Nowak
▴ 70
0
votes
1
reply
2.0k
views
DESeq with no replicates
Sequencing
miRNA
SmallRNA
DESeq
Sequencing
miRNA
SmallRNA
DESeq
updated 13.4 years ago by
Wolfgang Huber
★ 13k • written 13.4 years ago by
Wu, Xiwei
▴ 350
0
votes
1
reply
1.9k
views
Is normalization in edgeR required for small RNA sequencing data?
Sequencing
SmallRNA
edgeR
Sequencing
SmallRNA
edgeR
updated 11.6 years ago by
Mark Robinson
▴ 880 • written 11.6 years ago by
Danie
▴ 40
0
votes
1
reply
931
views
small RNA counts
counts
SmallRNA
Normalization
updated 2.4 years ago by
hauken_heyken
▴ 80 • written 2.5 years ago by
k___
▴ 30
2
votes
2
replies
696
views
Contradictory results in smallRNA differential expression analysis using DESeq2
SmallRNA
DESeq2
21 months ago
jucosie
• 0
0
votes
13
replies
682
views
Unexpected behavior of lfcShrink() function in DESeq2 analysis
DESeq2
SmallRNA
updated 9 weeks ago by
Michael Love
41k • written 10 weeks ago by
r.r.bioinf
• 0
3
votes
7
replies
1.4k
views
small dimensions in the matrix of counts from smallRNA using DESEq2
matrix
DESeq2
SmallRNA
dimensions
small
2.7 years ago
andreia
▴ 10
2
votes
0
replies
1.2k
views
Job:
PhD Studentship - Investigating Regulation of Transcription and Translation in Prostate Cancer
mirna
riboseq
smallrna
differential gene expression
Job
6.1 years ago
Andy Lynch
▴ 120
0
votes
0
replies
1.1k
views
Job:
Post-doc in Prostate Cancer Research (Statistics / Computational Biology) at University of St Andrews (+PhD position also available)
cancer
sequencing
rnaseq
methylation
smallrna
Job
5.9 years ago
Andy Lynch
▴ 120
2
votes
10
replies
2.2k
views
DEseq normalization Small RNA-seq data using rRNA
deseq2
normalization
smallrna
ribosomal rna
7.6 years ago
mosharrofgeb
▴ 10
13 results • Page
1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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