Showing : SmallRNA • reset
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small dimensions in the matrix of counts from smallRNA using DESEq2
matrix DESeq2 SmallRNA dimensions small
9 days ago • updated 8 days ago andreia • 0
6
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7
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708
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Normalization for small non-coding RNA
TMM deseq2 smallrna rnaseq
updated 2.8 years ago by ▴ 480 • written 2.8 years ago by ▴ 70
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Job: Post-doc in Prostate Cancer Research (Statistics / Computational Biology) at University of St Andrews (+PhD position also available)
cancer sequencing rnaseq methylation smallrna Job
3.2 years ago Andy Lynch ▴ 100
2
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Job: PhD Studentship - Investigating Regulation of Transcription and Translation in Prostate Cancer
mirna riboseq smallrna differential gene expression Job
3.5 years ago Andy Lynch ▴ 100
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1.1k
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DEseq normalization Small RNA-seq data using rRNA
deseq2 normalization smallrna ribosomal rna
4.9 years ago mosharrofgeb • 0
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small RNAs quantification
smallrna counts
5.0 years ago ribioinfo ▴ 90
0
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3
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finding differential expression pattern between paired columns of data frame.
Sequencing SmallRNA Microarray limma Sequencing SmallRNA Microarray limma
updated 7.1 years ago by 58k • written 7.1 years ago by ▴ 70
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Bioconductor Digest, Vol 115, Issue 22
Transcription Sequencing miRNA SmallRNA Annotation Normalization GO Cancer Organism edgeR
updated 9.0 years ago by 13k • written 9.0 years ago by ▴ 10
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Is normalization in edgeR required for small RNA sequencing data?
Sequencing SmallRNA edgeR Sequencing SmallRNA edgeR
updated 9.0 years ago by ▴ 870 • written 9.0 years ago by ▴ 40
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DESeq with no replicates
Sequencing miRNA SmallRNA DESeq Sequencing miRNA SmallRNA DESeq
updated 10.8 years ago by 13k • written 10.8 years ago by ▴ 350
10 results • Page 1 of 1
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Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
Comment: Issue::DesignPrimers DECIPHER by slwmartin • 0
Hey, I'm having this issue too. I've tried reinstalling using Conda a few times without luck. Did you reinstall with Conda or from the tar …
Comment: Log fold change interpretation of time series with Wald test by jd348 • 0
So would you recommend still using Log2fold change as a measurement for effect size?
Answer: Error in `*tmp*`$samples : $ operator is invalid for atomic vectors by James W. MacDonald 58k
I believe you want ``` > x <- as.matrix(read.delim("E:/bioinformatic/RNAseq/GSE168008_raw_count.txt", sep ="" ,row.names = 1)) > sampl…
Comment: Macbook M1 install genefilter failed by Michael Love 34k
What happens when you do ``` library(DESeq2) ``` If it says something about genefilter, then just try to install genefilter, not DESeq2 a…
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
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