Showing : SmallRNA • reset
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small RNA counts
counts SmallRNA Normalization
updated 5 months ago by ▴ 80 • written 6 months ago by ▴ 20
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small dimensions in the matrix of counts from smallRNA using DESEq2
matrix DESeq2 SmallRNA dimensions small
8 months ago andreia • 0
6
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7
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901
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Normalization for small non-coding RNA
TMM deseq2 smallrna rnaseq
updated 3.5 years ago by ▴ 480 • written 3.5 years ago by ▴ 70
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Job: Post-doc in Prostate Cancer Research (Statistics / Computational Biology) at University of St Andrews (+PhD position also available)
cancer sequencing rnaseq methylation smallrna Job
3.9 years ago Andy Lynch ▴ 100
2
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Job: PhD Studentship - Investigating Regulation of Transcription and Translation in Prostate Cancer
mirna riboseq smallrna differential gene expression Job
4.2 years ago Andy Lynch ▴ 100
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1.3k
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DEseq normalization Small RNA-seq data using rRNA
deseq2 normalization smallrna ribosomal rna
5.6 years ago mosharrofgeb • 0
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small RNAs quantification
smallrna counts
5.6 years ago ribioinfo ▴ 100
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finding differential expression pattern between paired columns of data frame.
Sequencing SmallRNA Microarray limma Sequencing SmallRNA Microarray limma
updated 7.8 years ago by 59k • written 7.8 years ago by ▴ 70
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Bioconductor Digest, Vol 115, Issue 22
Transcription Sequencing miRNA SmallRNA Annotation Normalization GO Cancer Organism edgeR
updated 9.7 years ago by 13k • written 9.7 years ago by ▴ 10
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Is normalization in edgeR required for small RNA sequencing data?
Sequencing SmallRNA edgeR Sequencing SmallRNA edgeR
updated 9.7 years ago by ▴ 870 • written 9.7 years ago by ▴ 40
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DESeq with no replicates
Sequencing miRNA SmallRNA DESeq Sequencing miRNA SmallRNA DESeq
updated 11.4 years ago by 13k • written 11.4 years ago by ▴ 350
11 results • Page 1 of 1
Recent ...
Replies
Comment: rtracklayer S.h by gibran • 0
Thanks, much appreciated. So I think this approach actually gets binaries and I'm not sure how to isolate the problem I was experiencing as…
Comment: DESeq2, Calculate the size factor by using median-of-ratio by KEREN • 0
Hi Michael, thank you for you reply. My concern here mainly focus on the high variances in samples of condition "mESC_mRNA_WT". I observed…
Comment: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by Rory Stark ★ 4.4k
I agree the documentation could be clearer -- it took me a while to understand what it said so I could address your issue!
Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by chrarnold • 0
Thanks a lot for your quick reply, it is very appreciated! Indeed, with your 2 suggested modifications, I can again reproduce the results f…
Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by Rory Stark ★ 4.4k
The object in the `.rds` file, `sampleMetaData.df`, is already a `DBA` object, with eight samples: > sampleMetaData.df <- readRDS("~/D…
Votes
Answer: rtracklayer S.h
Answer: rtracklayer S.h
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
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