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Splicing
•
reset
1
vote
6
replies
2.1k
views
SGSeq error on analyzeFeatures
SGSeq
analyzeFeatures
Splicing
9.4 years ago
Paolo Guarnieri
▴ 20
1
vote
3
replies
1.7k
views
Microarray data analysis for detecting alternative splicing
microarray
splicing
updated 8.3 years ago by
Sonika Tyagi
▴ 20 • written 9.5 years ago by
gv
▴ 40
1
vote
2
replies
1.5k
views
Coverage function assigns wrong weights for gapped alignments
genomicalignments
splicing
coverage
updated 4.6 years ago by
Michael Lawrence
★ 11k • written 7.1 years ago by
rasi1983
▴ 10
2
votes
2
replies
1.7k
views
Deseq2 alternative splicing in understudied organism
deseq2
splicing
updated 6.0 years ago by
Michael Love
41k • written 6.0 years ago by
yannickwurm
• 0
0
votes
1
reply
1.1k
views
About CIRI's output
ciri
splicing
splicesites
updated 4.3 years ago by
lhddiallo
• 0 • written 5.9 years ago by
csijst
• 0
0
votes
1
reply
889
views
Can DEXseq be used for splicing QTL analysis?
dexseq
splicing
sqtl
qtl
updated 5.3 years ago by
Alejandro Reyes
★ 1.9k • written 5.3 years ago by
rtunney2
• 0
0
votes
1
reply
501
views
Transcriptome assembly: single individual or pooled samples
transcriptome
splicing
assembly
updated 17 months ago by
James W. MacDonald
65k • written 17 months ago by
Marianna
▴ 20
5
votes
16
replies
2.6k
views
Read counts generated by SGSeq are always 0
sgseq
splicing
alternative splicing
updated 8.2 years ago by
Leonard Goldstein
▴ 200 • written 8.2 years ago by
vakul.mohanty
▴ 20
1
vote
2
replies
1.5k
views
Is it possible to get Isoform-level differential isoform usage form DRIMSeq?
DRIMSeq
splicing
differential isoform usage
updated 7.3 years ago by
Gosia Nowicka
▴ 90 • written 7.3 years ago by
kristoffer.vittingseerup
▴ 20
2
votes
7
replies
2.2k
views
EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
edger
normalization
differential exon usage
splicing
updated 3.5 years ago by
Yunshun Chen
▴ 840 • written 3.5 years ago by
oakhamwolf
• 0
0
votes
1
reply
229
views
Using splicing junction counts with edgeR/limma-voom
splicing
limma
edgeR
updated 5 weeks ago by
Gordon Smyth
50k • written 5 weeks ago by
scoops_streams_06
• 0
0
votes
0
replies
1.5k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq
splicing
python
SAM
8.6 years ago
Fiona
▴ 70
0
votes
0
replies
687
views
Psichomics Suppa Input issue
psichomics
SUPPA
Splicing
Alternative Splicing
Retained Introns
3.5 years ago
noahhelton98
▴ 20
0
votes
1
reply
832
views
DEXSeq Exon count not working, please help with an alternative like featureCounts
splicing
Exon
featureCounts
subread
DEXSeq
23 months ago
NIK
• 0
0
votes
1
reply
823
views
JunctionSeq producing strangely large effect sizes for certain exon counting bins
junctionseq
splicing
RNAseq
DEXSeq
4.4 years ago
stuart
▴ 10
0
votes
3
replies
1.1k
views
DEXSeq Splicing Result with incomplete lines between exons
DEXSeq
Splicing
Exon Usage
4.2 years ago
gunjan.dikshit
• 0
16 results • Page
1 of 1
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Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM()
by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Comment: DEseq2 coefficient
by
JKim
• 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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