Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Splicing
•
reset
1
vote
6
replies
2.5k
views
SGSeq error on analyzeFeatures
SGSeq
analyzeFeatures
Splicing
10.3 years ago
Paolo Guarnieri
▴ 20
1
vote
3
replies
2.0k
views
Microarray data analysis for detecting alternative splicing
microarray
splicing
updated 9.2 years ago by
Sonika Tyagi
▴ 20 • written 10.4 years ago by
gv
▴ 40
1
vote
2
replies
1.8k
views
Coverage function assigns wrong weights for gapped alignments
genomicalignments
splicing
coverage
updated 5.5 years ago by
Michael Lawrence
★ 11k • written 8.0 years ago by
rasi1983
▴ 10
2
votes
2
replies
2.1k
views
Deseq2 alternative splicing in understudied organism
deseq2
splicing
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
yannickwurm
• 0
0
votes
1
reply
1.3k
views
About CIRI's output
ciri
splicing
splicesites
updated 5.2 years ago by
lhddiallo
• 0 • written 6.9 years ago by
csijst
• 0
0
votes
1
reply
1.1k
views
Can DEXseq be used for splicing QTL analysis?
dexseq
splicing
sqtl
qtl
updated 6.2 years ago by
Alejandro Reyes
★ 1.9k • written 6.2 years ago by
rtunney2
• 0
0
votes
1
reply
757
views
Transcriptome assembly: single individual or pooled samples
transcriptome
splicing
assembly
updated 2.4 years ago by
James W. MacDonald
68k • written 2.4 years ago by
Marianna
▴ 20
5
votes
16
replies
3.2k
views
Read counts generated by SGSeq are always 0
sgseq
splicing
alternative splicing
updated 9.1 years ago by
Leonard Goldstein
▴ 260 • written 9.1 years ago by
vakul.mohanty
▴ 20
1
vote
2
replies
1.8k
views
Is it possible to get Isoform-level differential isoform usage form DRIMSeq?
DRIMSeq
splicing
differential isoform usage
updated 8.2 years ago by
Gosia Nowicka
▴ 90 • written 8.2 years ago by
kristoffer.vittingseerup
▴ 20
2
votes
7
replies
3.2k
views
EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
edger
normalization
differential exon usage
splicing
updated 4.4 years ago by
Yunshun Chen
▴ 900 • written 4.4 years ago by
oakhamwolf
• 0
0
votes
1
reply
791
views
Using splicing junction counts with edgeR/limma-voom
splicing
limma
edgeR
updated 12 months ago by
Gordon Smyth
52k • written 12 months ago by
scoops_streams_06
• 0
0
votes
0
replies
1.7k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq
splicing
python
SAM
9.5 years ago
Fiona
▴ 70
0
votes
0
replies
934
views
Psichomics Suppa Input issue
psichomics
SUPPA
Splicing
Alternative Splicing
Retained Introns
4.4 years ago
noahhelton98
▴ 20
0
votes
1
reply
1.2k
views
DEXSeq Exon count not working, please help with an alternative like featureCounts
splicing
Exon
featureCounts
subread
DEXSeq
2.8 years ago
NIK
• 0
0
votes
1
reply
1.1k
views
JunctionSeq producing strangely large effect sizes for certain exon counting bins
junctionseq
splicing
RNAseq
DEXSeq
5.3 years ago
stuart
▴ 10
0
votes
3
replies
1.5k
views
DEXSeq Splicing Result with incomplete lines between exons
DEXSeq
Splicing
Exon Usage
5.1 years ago
gunjan.dikshit
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: Package developing and interoperation with Bioconductor
by
shepherl
4.1k
Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files
by
Sofia
• 0
1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …
Comment: Validity of SingleR with very small bulk RNAseq reference
by
Rohit
• 0
Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge
Comment: CpGs with genomic positions greater than the chromosome size in EPICv2?
by
Joshua Llano
• 0
Thank you for your reply James. I was worried that it was my mistake.
Comment: Annotation package for Manduca sexta
by
GA
▴ 10
Thank you!
Votes
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
Awards
• All
Supporter
to
bhanu.chandra1
• 0
Popular Question
to
Gordon Smyth
52k
Popular Question
to
mdeea123
▴ 10
Popular Question
to
GA
▴ 10
Popular Question
to
Elizabeth
• 0
Locations
• All
Brazil,
4 minutes ago
US,
23 minutes ago
United States,
36 minutes ago
Sweden,
58 minutes ago
United States,
1 hour ago
Traffic: 733 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6