Bioconductor Stringtie

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stringtie IsoformSwitchAnalyzeR pfamAnalyzeR gtf

updated 4 days ago by James W. MacDonald 64k • written 4 days ago by sumitra.20 • 0

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578

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DESeq2 TPM rawcounts StringTie

updated 15 months ago by Michael Love 41k • written 15 months ago by snijesh ▴ 20

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isoform RNA-seq hisat2 stringtie ballgown

3.2 years ago ra711 • 0

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ballgown StringTie galaxy rnaseq

updated 17 months ago by Kevin Blighe 3.9k • written 3.3 years ago by lakshmi9c • 0

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deseq2 StringTie RNA-seq normalisation

updated 4.0 years ago by Michael Love 41k • written 4.0 years ago by JindrichK • 0

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featureCount rna-seq gene_id re_gene_id stringtie

updated 4.9 years ago by Wei Shi ★ 3.5k • written 4.9 years ago by IRAIA.MAIALEN • 0

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1.2k

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tximport stringtie RNA-seq analysis

updated 5.0 years ago by James W. MacDonald 64k • written 5.0 years ago by Mithil Gaikwad • 0

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prepDE STRINGTIE deseq2

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by Nancy ▴ 10

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1.3k

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tximport stringtie

5.8 years ago • updated 5.6 years ago matrs ▴ 10

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hisat2 stringtie ballgown RNAseq

5.8 years ago • updated 5.6 years ago Nancy ▴ 10

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1.2k

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Ballgown Stringtie DEG rnaseq

5.6 years ago vharshavardhanan • 0

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ballgown biologicalreplicates technical replicates stringtie

updated 6.0 years ago by Alyssa Frazee ▴ 210 • written 6.7 years ago by linda.boshans • 0

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stringtie illumina hisat2 ballgown

updated 6.0 years ago by k.vitting.seerup ▴ 120 • written 6.0 years ago by amy16 • 0

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ballgown stringtie

updated 6.7 years ago by linda.boshans • 0 • written 7.8 years ago by bhawley1991 ▴ 10

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ballgown stringtie voom limma differential gene expression rnaseq

updated 7.2 years ago by Alyssa Frazee ▴ 210 • written 7.2 years ago by jcalis ▴ 10

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ballgown stringtie

updated 7.4 years ago by Jeff Leek ▴ 640 • written 7.4 years ago by alva.james • 0

16 results • Page 1 of 1

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Comment: NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R by R_Page • 0

Thank you, this works well. As for CDNA, I figured out what I need to find, and have made a new post regarding it.

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hello Michael, I am continuing here and need your expert answer on this again I have performed small rna loci and DNA methylation mappin…

Comment: GOslim missing GO term by amanda • 0

Thank you for the advice and many thanks! It is WGCNA analysis. I will try your method today and see if there are some consistencies.

Comment: GOslim missing GO term by James W. MacDonald 64k

Is this a WGCNA analysis (multiple co-expression clusters sounds like WGCNA)? If so, none of that is inferential or easily interpreted. It …

Comment: GOslim missing GO term by amanda • 0

For each group, I generated multiple co-expression clusters, and within each cluster, cluster PC1 was correlated with PC1 of multiple clini…

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Comment: NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R

Answer: NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R

Answer: Lower FDR cutoff gives more gene counts

Comment: Why is DMRcate not available for Bioconductor version 3.18?

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