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Bioconductor Course, Kenya 2025: Applications Open!
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Bioconductor
12 weeks ago
Maria Doyle
▴ 100
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RNA-seq analysis with Bioconductor Carpentries workshop, Boston, Jul 31-Aug 1
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24 months ago
Maria Doyle
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Include your Bioconductor tutorial in Smörgåsbord 2023, May 22-26!
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24 months ago
Maria Doyle
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Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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2.0 years ago
Maria Doyle
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BioCAsia, 5-6th December 2019, Sydney, Australia
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5.9 years ago
Peter Hickey
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BioCAsia, 29-30th November 2018, Melbourne, Australia
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updated 6.4 years ago by
Gordon Smyth
52k • written 6.7 years ago by
Steve Pederson
▴ 170
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LAST CHANCE: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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7.2 years ago
mnchoi67
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May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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7.3 years ago
mnchoi67
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Course: Statistics and Computing in Genome Data Science, July 10-15, 2016
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9.2 years ago
Martin Morgan
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Help with neuroblastoma working group
Training
updated 9.7 years ago by
Vincent J. Carey, Jr.
6.7k • written 9.7 years ago by
paul.mineau
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Job:
Services/Outreach orientend bioinformatics positions at EMBL - Heidelberg
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10.2 years ago
Wolfgang Huber
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NGS data analysis training courses at EMBL-EBI
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10.3 years ago
gr231
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Beginner's guide to DESeq2 pdf link broken
deseq2
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updated 10.5 years ago by
Michael Love
43k • written 10.5 years ago by
sunshinne
• 0
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Course Announcement - Next Generation Data Analysis with R/Bioc (Dec 5-8, 2014)
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10.6 years ago
Thomas Girke
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Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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