Bioconductor XVector

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IRanges XVector AtomicList

written 2.4 years ago by Pierre-Luc Germain ▴ 20

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XVector docker Install

3.0 years ago RobKo ▴ 10

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XVector

updated 3.7 years ago by Martin Morgan 25k • written 3.7 years ago by robmaz77 ▴ 20

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S4Vectors IRanges XVector GenomicRanges scran

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Momo • 0

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bioconductor iranges s4vectors xvector r 3.3.2

updated 6.3 years ago by becker.gabriel ▴ 10 • written 6.3 years ago by chokoiboko • 0

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variantannotation xvector iranges

6.4 years ago Vivek.b ▴ 100

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subseq Xvector dnastringset

updated 7.5 years ago by Hervé Pagès 16k • written 7.5 years ago by Sophie • 0

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950

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xvector

7.5 years ago Charles Plessy ▴ 180

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software error gcrma Xvector iranges

8.3 years ago • updated 8.2 years ago gary_smith • 0

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Network Cancer IRanges XVector

10.2 years ago Hervé Pagès 16k

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Cancer XVector

10.2 years ago Hervé Pagès 16k

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IRanges GenomicRanges VariantTools XVector IRanges GenomicRanges VariantTools XVector

updated 11.0 years ago by Michael Lawrence ★ 11k • written 11.0 years ago by heyi xiao ▴ 360

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4.9k

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XVector XVector

updated 11.3 years ago by Hervé Pagès 16k • written 11.3 years ago by Pengcheng Yang ▴ 60

13 results • Page 1 of 1

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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k

`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample.

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…

Answer: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.

Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…

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Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu

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