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XVector
•
reset
0
votes
3
replies
1.1k
views
Extracting values from out-of-bounds Rle Views
IRanges
XVector
AtomicList
written 3.5 years ago by
Pierre-Luc Germain
▴ 20
5
votes
4
replies
5.7k
views
XVector installation fails because zlib.h is not found
XVector
docker
Install
4.1 years ago
RobKo
▴ 10
2
votes
1
reply
1.1k
views
is check=FALSE safe in compact()?
XVector
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
robmaz77
▴ 20
2
votes
2
replies
2.8k
views
Error in installation of scran
S4Vectors
IRanges
XVector
GenomicRanges
scran
updated 6.9 years ago by
Aaron Lun
★ 29k • written 6.9 years ago by
Momo
• 0
0
votes
15
replies
3.2k
views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor
iranges
s4vectors
xvector
r 3.3.2
updated 7.4 years ago by
becker.gabriel
▴ 10 • written 7.4 years ago by
chokoiboko
• 0
0
votes
2
replies
1.7k
views
VariantAnnotation::locateVariants error coming from XVector
variantannotation
xvector
iranges
7.6 years ago
Vivek.b
▴ 100
2
votes
5
replies
5.7k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 8.6 years ago by
Hervé Pagès
16k • written 8.6 years ago by
Sophie
• 0
0
votes
0
replies
1.1k
views
Suggestion for a regression test in XVector
xvector
8.7 years ago
Charles Plessy
▴ 180
0
votes
5
replies
2.9k
views
Problem installing XVector package
software error
gcrma
Xvector
iranges
9.4 years ago • updated 9.3 years ago
gary_smith
• 0
0
votes
0
replies
1.4k
views
回复: XVector
Network
Cancer
IRanges
XVector
11.3 years ago
Hervé Pagès
16k
0
votes
0
replies
1.7k
views
XVector
Cancer
XVector
11.3 years ago
Hervé Pagès
16k
0
votes
7
replies
2.7k
views
VariantTools installation problem: dependencies not available
IRanges
GenomicRanges
VariantTools
XVector
IRanges
GenomicRanges
VariantTools
XVector
updated 12.1 years ago by
Michael Lawrence
★ 11k • written 12.1 years ago by
heyi xiao
▴ 360
1
vote
6
replies
5.6k
views
ERROR: compilation failed for package XVector
XVector
XVector
updated 12.4 years ago by
Hervé Pagès
16k • written 12.4 years ago by
Pengcheng Yang
▴ 60
13 results • Page
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Answer: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. We will …
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
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aqeel
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Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
Answer: How does contrasts.fit do in limma to extract comparisons with a model having in
by
Gordon Smyth
53k
The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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