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XVector
•
reset
0
votes
3
replies
1.1k
views
Extracting values from out-of-bounds Rle Views
IRanges
XVector
AtomicList
written 3.5 years ago by
Pierre-Luc Germain
▴ 20
5
votes
4
replies
5.6k
views
XVector installation fails because zlib.h is not found
XVector
docker
Install
4.0 years ago
RobKo
▴ 10
2
votes
1
reply
1.1k
views
is check=FALSE safe in compact()?
XVector
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
robmaz77
▴ 20
2
votes
2
replies
2.8k
views
Error in installation of scran
S4Vectors
IRanges
XVector
GenomicRanges
scran
updated 6.9 years ago by
Aaron Lun
★ 29k • written 6.9 years ago by
Momo
• 0
0
votes
15
replies
3.1k
views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor
iranges
s4vectors
xvector
r 3.3.2
updated 7.3 years ago by
becker.gabriel
▴ 10 • written 7.3 years ago by
chokoiboko
• 0
0
votes
2
replies
1.7k
views
VariantAnnotation::locateVariants error coming from XVector
variantannotation
xvector
iranges
7.5 years ago
Vivek.b
▴ 100
2
votes
5
replies
5.6k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
Sophie
• 0
0
votes
0
replies
1.1k
views
Suggestion for a regression test in XVector
xvector
8.6 years ago
Charles Plessy
▴ 180
0
votes
5
replies
2.9k
views
Problem installing XVector package
software error
gcrma
Xvector
iranges
9.3 years ago • updated 9.2 years ago
gary_smith
• 0
0
votes
0
replies
1.4k
views
回复: XVector
Network
Cancer
IRanges
XVector
11.2 years ago
Hervé Pagès
16k
0
votes
0
replies
1.7k
views
XVector
Cancer
XVector
11.2 years ago
Hervé Pagès
16k
0
votes
7
replies
2.7k
views
VariantTools installation problem: dependencies not available
IRanges
GenomicRanges
VariantTools
XVector
IRanges
GenomicRanges
VariantTools
XVector
updated 12.0 years ago by
Michael Lawrence
★ 11k • written 12.0 years ago by
heyi xiao
▴ 360
1
vote
6
replies
5.5k
views
ERROR: compilation failed for package XVector
XVector
XVector
updated 12.3 years ago by
Hervé Pagès
16k • written 12.3 years ago by
Pengcheng Yang
▴ 60
13 results • Page
1 of 1
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList
by
Kevin Blighe
★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data
by
Kevin Blighe
★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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