Showing : arrayexpress • reset
3
votes
4
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2.9k
views
lm.fit incompatible dimensions
oligo arrayexpress limma
updated 4.2 years ago by • 0 • written 5.3 years ago by • 0
2
votes
3
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2.0k
views
ArrayExpress unable to find raw data: "Experiment has no raw files available"
arrayexpress
updated 7.4 years ago by ▴ 20 • written 7.4 years ago by ▴ 180
0
votes
8
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3.2k
views
Reading Agilent files using read.maimages
Survival DynDoc genefilter tkWidgets affy vsn marray convert ArrayExpress Survival affy
updated 16.7 years ago by ▴ 20 • written 16.7 years ago by ▴ 100
0
votes
5
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3.3k
views
loading processed data into eset class
ArrayExpress ArrayExpress
updated 13.8 years ago by 6.7k • written 13.8 years ago by ▴ 90
0
votes
2
replies
1.3k
views
Limma - GenePix
ArrayExpress ArrayExpress
updated 14.9 years ago by ▴ 810 • written 14.9 years ago by ▴ 20
0
votes
5
replies
1.8k
views
Expressionset from ArrayExpress processed data
ArrayExpress SANTA ArrayExpress SANTA
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 20
0
votes
3
replies
1.4k
views
Differential Expression of c.diff. microarray
arrayexpress differential expression
9.0 years ago SSK ▴ 10
0
votes
2
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1.3k
views
Problem importing ArrayExpress data for custom array into BioConductor
Microarray cdf ArrayExpress Microarray cdf ArrayExpress
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ▴ 10
0
votes
4
replies
1.0k
views
Reading ArrayExpress data [was Re: questions on the ImaGene data using limma package]
Annotation Normalization Cancer limma ArrayExpress Annotation Normalization Cancer limma
updated 15.5 years ago by ▴ 30 • written 15.5 years ago by 50k
0
votes
2
replies
1.1k
views
Reading SMD data in limma
limma ArrayExpress limma ArrayExpress
13.9 years ago Gordon Smyth 50k
3
votes
2
replies
1.2k
views
NChannelSet --> eSet/expressionSet ? How to transform?
ExpressionData ArrayExpress
updated 3.1 years ago by 50k • written 3.1 years ago by • 0
0
votes
5
replies
1.5k
views
Limma - GenePix
limma ArrayExpress limma ArrayExpress
updated 14.9 years ago by ▴ 810 • written 14.9 years ago by 50k
0
votes
3
replies
1.2k
views
Reg: normalization of ArrayExpress data
Microarray Normalization GO ArrayExpress Microarray Normalization GO ArrayExpress
14.2 years ago Rohit Farmer ▴ 170
0
votes
1
reply
1.9k
views
Error while reading ArrayExpress dataset
arrayexpress
updated 8.9 years ago by 65k • written 8.9 years ago by • 0
0
votes
1
reply
1.5k
views
ArrayExpress error: unable to find an inherited method for function \"experimentData\", for signature \"try-error\"
ArrayExpress ArrayExpress
updated 12.4 years ago by ▴ 20 • written 12.4 years ago by ▴ 30
2
votes
3
replies
1.6k
views
Could not access the Bioconductor repository
bioconductor proxy arrayexpress
updated 5.3 years ago by 65k • written 5.3 years ago by • 0
0
votes
3
replies
1.1k
views
mageml
ArrayExpress ArrayExpress
updated 20.5 years ago by 6.7k • written 20.5 years ago by ▴ 20
0
votes
1
reply
615
views
I need published data with bio and tech reps
ArrayExpress ArrayExpress
updated 18.8 years ago by ▴ 80 • written 18.8 years ago by ★ 6.0k
0
votes
1
reply
1.2k
views
CodeLink Package: Not a Codelink exported file.
codelink ArrayExpress codelink ArrayExpress
updated 18.1 years ago by ▴ 760 • written 18.1 years ago by ▴ 600
0
votes
1
reply
949
views
making ExpressionSet from ArrayExpress
convert ArrayExpress convert ArrayExpress
updated 17.3 years ago by ▴ 580 • written 17.3 years ago by ★ 13k
0
votes
2
replies
1.0k
views
About ArrayExpress MAGE-TAB tools
Microarray GEOquery ArrayExpress Microarray GEOquery ArrayExpress
updated 15.9 years ago by ▴ 280 • written 15.9 years ago by ▴ 450
0
votes
1
reply
831
views
An importMAGEML problem in RMAGEML Package
RMAGEML ArrayExpress RMAGEML ArrayExpress
updated 15.8 years ago by ★ 13k • written 15.8 years ago by ▴ 10
0
votes
2
replies
1.4k
views
Importing "Detailed sample annotation" from ArrayExpress DB into R
ArrayExpress ArrayExpress
15.7 years ago Markus Schmidberger ▴ 380
0
votes
1
reply
838
views
About ArrayExpress MAGE-TAB tools
Microarray ArrayExpress Microarray ArrayExpress
updated 15.6 years ago by 21k • written 15.6 years ago by ★ 2.0k
0
votes
1
reply
959
views
Query regarding GEO Database
ArrayExpress ArrayExpress
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 120
0
votes
1
reply
814
views
Unable to get the Platform Table using fData on eset object
ArrayExpress ArrayExpress
updated 14.0 years ago by ★ 13k • written 14.0 years ago by ▴ 30
0
votes
1
reply
952
views
Reg: Reading SMD data using ArrayExpress pacakage
ArrayExpress ArrayExpress
updated 13.9 years ago by ▴ 60 • written 13.9 years ago by ▴ 170
0
votes
1
reply
926
views
Reading SMD data in limma
limma ArrayExpress limma ArrayExpress
updated 13.9 years ago by ▴ 90 • written 13.9 years ago by ▴ 170
0
votes
2
replies
2.0k
views
ArrayExpress: missing cdf environment!
Cancer hgu133a cdf ArrayExpress Cancer hgu133a cdf ArrayExpress
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 110
0
votes
3
replies
1.4k
views
Error loading ArrayExpress in R 2.12 Mac
ArrayExpress ArrayExpress
updated 13.5 years ago by 21k • written 13.5 years ago by ▴ 550
0
votes
2
replies
2.4k
views
comparing HG-U219 data to HG-U133 data from public databases
Normalization convert ArrayExpress Normalization convert ArrayExpress
updated 13.2 years ago by ▴ 110 • written 13.2 years ago by ▴ 340
0
votes
1
reply
979
views
magetab2bioc error
ArrayExpress ArrayExpress
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ▴ 10
0
votes
14
replies
2.2k
views
Combining data from different versions of Illumina HumanHT-12 v3
probe limma ArrayExpress probe limma ArrayExpress
updated 13.1 years ago by ★ 3.6k • written 13.1 years ago by ▴ 220
0
votes
1
reply
1.5k
views
Combining data from different versions of Illumina HumanHT-12 v3
Normalization probe safe ArrayExpress Normalization probe safe ArrayExpress
updated 13.1 years ago by ★ 3.6k • written 13.1 years ago by ▴ 220
0
votes
5
replies
1.6k
views
Combining data from different versions of Illumina HumanHT-12 v3
Normalization probe limma safe ArrayExpress Normalization probe limma safe ArrayExpress
updated 13.0 years ago by ★ 3.6k • written 13.0 years ago by ▴ 220
0
votes
1
reply
1.4k
views
ArrayExpress error: unable to find an inherited method for function \"experimentData\", for signature \"try-error\"
ArrayExpress ArrayExpress
updated 12.4 years ago by 6.7k • written 12.4 years ago by ★ 13k
0
votes
2
replies
1.8k
views
Odd warning in simpleaffy, using quality control
cdf probe simpleaffy ArrayExpress cdf probe simpleaffy ArrayExpress
updated 12.2 years ago by ▴ 280 • written 12.2 years ago by ▴ 720
0
votes
1
reply
2.0k
views
Error by using gpr data with marray
limma marray ArrayExpress limma marray ArrayExpress
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ★ 13k
0
votes
2
replies
1.4k
views
Error when using impute to get missing values
impute ArrayExpress impute ArrayExpress
updated 12.1 years ago by ★ 4.2k • written 12.1 years ago by ▴ 10
0
votes
5
replies
1.9k
views
XML package - 500 internal server error
GEOquery ArrayExpress GEOquery ArrayExpress
updated 11.0 years ago by 21k • written 11.0 years ago by ▴ 720
0
votes
1
reply
1.5k
views
Problem with NChannelSet objects using Agilent Data with arrayQualityMetrics package
arrayQualityMetrics ArrayExpress arrayQualityMetrics ArrayExpress
updated 10.2 years ago by ★ 13k • written 10.2 years ago by ▴ 20
0
votes
1
reply
1.6k
views
Reading MAGE-ML cdf into bioconductor for limma in R v. 3.0.2
Microarray cdf probe makecdfenv RMAGEML ArrayExpress Microarray cdf probe makecdfenv
updated 10.1 years ago by 65k • written 10.1 years ago by ★ 13k
0
votes
1
reply
743
views
RMAGEML installation and ArrayExpress database
Cancer RMAGEML ArrayExpress Cancer RMAGEML ArrayExpress
15.7 years ago Martin Morgan 25k
0
votes
5
replies
1.8k
views
arrayExpress: problem running code from the vignette
arrayexpress
8.0 years ago kevin.rue ▴ 350
2
votes
1
reply
1.2k
views
Output of ArrayExpress() function
oligo oligoclasses arrayexpress
updated 7.3 years ago by 65k • written 7.3 years ago by • 0
4
votes
1
reply
1.6k
views
Mismatched ArrayExpress microarray annotation package
arrayexpress ArrayExpress hthgu133a.db
6.9 years ago sandmann.t ▴ 70
3
votes
6
replies
2.8k
views
function getAE from ArrayExpress needs update because EBI has switched to https
arrayexpress xml rcurl http EBI
updated 6.6 years ago by ★ 13k • written 6.6 years ago by ▴ 610
0
votes
2
replies
1.6k
views
AffyBatch and ArrayExpress
arrayexpress affy bugs
updated 6.2 years ago by 65k • written 6.2 years ago by ▴ 230
1
vote
1
reply
1.1k
views
Agilent Data Normalization Result
limma agilent arrayexpress
updated 6.1 years ago by 50k • written 6.1 years ago by • 0
1
vote
4
replies
2.0k
views
Need help loading gene expression data into R using either ArrayExpress or GEOquery R packages
arrayexpress geoquery geneexpression
updated 6.1 years ago by 21k • written 6.1 years ago by ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Comment: Timecourse RNASeq analysis by Aurora • 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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