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Abiologist
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Aleena
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Replies
Comment: Slightly different count plots from R and spreadsheet
by
Michael Love
42k
Change timepoint to an integer in the data frame:
```
as.numeric(as.character( <factor> ))
```
Then it should make points instead of boxe…
Answer: WGNCA kME vs. kIM
by
Vitor
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0
You can compare kIM and kME within module assignments. The plot below is for my network (I used Pearson correlation and signed network).
…
Comment: ChAMP installation issue
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James W. MacDonald
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If you have beta values, try the `DSS` package. An alternative is to compute the logit transform (to M-values), which are amenable to analy…
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James W. MacDonald
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The obvious would be to check that you have genes that map to that pathway. It's unusual to have so many NA values for your NCBI gene IDs, …
Comment: ChAMP installation issue
by
Tahirah
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0
Thanks a lot. But unfortunately it didn't work. I guess I will have to wait until ChAMP becomes available for version 3.19
In the meantime …
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