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bioconductor
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News:
EuroBioC2026 abstract submission is open!
Conference
Bioconductor
11 days ago
laurah ondari
• 0
3
votes
5
replies
375
views
upstream git branches of bioc-release
Bioconductor
written 14 days ago by
Jeroen
▴ 10
0
votes
1
reply
343
views
Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO
Bioconductor
Arabidopsis_thaliana_Data
updated 16 days ago by
Kevin Blighe
★ 4.0k • written 4 months ago by
Sabina
• 0
0
votes
2
replies
416
views
After running samtools, the featureCounts command crashed.
RNASeqData
Bioconductor
RNASeq
updated 7 days ago by
MarcHintz99
• 0 • written 11 weeks ago by
Rui
• 0
0
votes
1
reply
489
views
Problem with the TMB plot
Bioconductor
updated 18 days ago by
Kevin Blighe
★ 4.0k • written 11 weeks ago by
nayanajose
• 0
2
votes
3
replies
482
views
DESeq2 design for haplotype MPRA
Bioconductor
updated 18 days ago by
aimesd808
• 0 • written 7 weeks ago by
Rita
• 0
0
votes
0
replies
254
views
Problem with viewGO(ref_path) in SpliceWiz
Bioconductor
SpliceWiz
updated 20 days ago by
Kevin Blighe
★ 4.0k • written 11 weeks ago by
jalte.jelsing
• 0
0
votes
2
replies
177
views
Alternative to BrainArray custom CDF packages for Affymetrix chips?
Bioconductor
updated 20 days ago by
Guido Hooiveld
★ 4.1k • written 24 days ago by
Stephen Piccolo
▴ 600
1
vote
0
replies
68
views
News:
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Bioconductor
24 days ago
Maria Doyle
▴ 110
0
votes
2
replies
268
views
featureCounts -L: high unassigned:mapq fraction
Bioconductor
written 9 weeks ago by
sikora
• 0
1
vote
2
replies
434
views
Streamlining the computing time for MiloDE p-value correction in large dataset?
SingleCellExperiment
edgeR
miloR
Bioconductor
updated 4 weeks ago by
Kevin Blighe
★ 4.0k • written 9 weeks ago by
Joseph
• 0
1
vote
2
replies
377
views
incomplete imputation of missing values with LEA impute() function
Bioconductor
LEA
updated 4 weeks ago by
Kevin Blighe
★ 4.0k • written 9 weeks ago by
nadia
• 0
2
votes
2
replies
518
views
What R/Bioconductor tools would you recommend for the analysis of sncRNA, specifically piRNA?
Bioconductor
9 weeks ago • updated 27 days ago
Matthew Thornton
▴ 390
0
votes
3
replies
263
views
Integration: Paired-end vs healthy single-end from a different source
Bioconductor
written 5 weeks ago by
m.c.ruma
• 0
1
vote
4
replies
397
views
"Watched Tags" are being erased rather than updated
Bioconductor
updated 22 days ago by
RalphSavage99
• 0 • written 5 weeks ago by
jessica.anderson
▴ 10
0
votes
1
reply
225
views
Question about collapsing ASVs by genus level during DESeq2 analysis
Bioconductor
updated 4 weeks ago by
Michael Love
43k • written 8 weeks ago by
acharyapratiksha24
• 0
0
votes
7
replies
2.1k
views
News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
written 2.8 years ago by
Maria Doyle
▴ 110
0
votes
0
replies
12
views
Spam:
The Neon Code PolyTrack
Bioconductor
5 weeks ago
residentialplayt
0
2
votes
1
reply
166
views
News:
Bioconductor 3.22 Released!
release
Release
Bioconductor
Software
written 5 weeks ago by
shepherl
4.2k
0
votes
1
reply
138
views
News:
Save the Date: BioC2026
Bioconductor
written 5 weeks ago by
shepherl
4.2k
0
votes
3
replies
242
views
Using DESeq2 for age prediction
Bioconductor
updated 6 weeks ago by
ATpoint
★ 5.0k • written 6 weeks ago by
picasa1983
• 0
4
votes
3
replies
605
views
DESeq2 for candidate gene analysis
Bioconductor
written 11 weeks ago by
piffelpaff
▴ 20
0
votes
3
replies
286
views
"organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
Bioconductor
7 weeks ago
ubjw24
• 0
0
votes
3
replies
426
views
NA values for DESeq2 p-values and adjusted p-values using large sample sizes
Bioconductor
9 weeks ago • updated 7 weeks ago
Gabriel
• 0
0
votes
1
reply
158
views
Gatins Set error
flowCore
Bioconductor
updated 9 weeks ago by
James W. MacDonald
68k • written 9 weeks ago by
yoav.lubelsky
• 0
0
votes
1
reply
215
views
Job:
Senior Teaching Fellow (MSc Computational Biomedicine)
Bioconductor
updated 14 days ago by
eja.ger.m
• 0 • written 9 weeks ago by
s.samarajiwa
• 0
0
votes
1
reply
360
views
News:
Bioconductor 3.22 Release Schedule
Devel
Release
Bioconductor
written 12 weeks ago by
shepherl
4.2k
1
vote
2
replies
338
views
Error Loading Experiment from SimBenchData Package
Bioconductor
10 weeks ago • updated 9 weeks ago
ksankaran
• 0
0
votes
3
replies
338
views
Sharing a collection of datasets in ExperimentHub
Bioconductor
updated 9 weeks ago by
Aaron Lun
★ 29k • written 11 weeks ago by
Stephen Piccolo
▴ 600
0
votes
6
replies
484
views
GO.db and others package Download failure
GO.db
Bioconductor
updated 11 weeks ago by
James W. MacDonald
68k • written 11 weeks ago by
Skyler
• 0
0
votes
1
reply
187
views
Job:
Research and Service Group Leader positions in AI in Biology at EMBL
Bioconductor
written 11 weeks ago by
Wolfgang Huber
★ 13k
0
votes
1
reply
377
views
News:
Bioconductor Board Nominations Open
TAB
Bioconductor
CAB
written 4 months ago by
shepherl
4.2k
0
votes
0
replies
221
views
News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
5 months ago
Wei Shi
★ 3.6k
0
votes
3
replies
2.3k
views
Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-derived metabolic measures and various traits
limma
Bioconductor
Metabolomics
updated 5 months ago by
Gordon Smyth
53k • written 5 months ago by
anni
• 0
0
votes
2
replies
1.1k
views
Starting with a clean bioconductor rstudio container
Bioconductor
updated 5 months ago by
ATpoint
★ 5.0k • written 5 months ago by
Ramiro
• 0
0
votes
9
replies
13k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 6 months ago by
Hadi
• 0 • written 4.3 years ago by
charlotte
▴ 10
0
votes
0
replies
339
views
Job:
Lab Head positions at the WEHI, Melbourne, Australia
JobPosting
Bioconductor
6 months ago
Gordon Smyth
53k
0
votes
4
replies
8.8k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
written 2.2 years ago by
Aytaç
• 0
0
votes
2
replies
560
views
GBCC2025: New Scholarship Opportunities Available!
Community
Conference
GBCC2025
Bioconductor
updated 3 months ago by
Liona
• 0 • written 6 months ago by
Maria Doyle
▴ 110
0
votes
1
reply
463
views
Best tximport quant.genes.sf
tximport
tximeta
Bioconductor
updated 7 months ago by
ATpoint
★ 5.0k • written 7 months ago by
yob4003
• 0
0
votes
2
replies
829
views
Version conflict when pushing to scQTLtools devel branch
Bioconductor
written 7 months ago by
XFWu
• 0
1
vote
5
replies
1.8k
views
Package developing and interoperation with Bioconductor
Package
Bioconductor
written 8 months ago by
slizchap
• 0
0
votes
5
replies
2.7k
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
written 22 months ago by
Maria Doyle
▴ 110
0
votes
1
reply
855
views
News:
List of Deprecated Packages for Bioc3.20
Release
Devel
Bioconductor
13 months ago • updated 8 months ago
shepherl
4.2k
0
votes
0
replies
543
views
News:
EuroBioC2025: Abstract Submissions Open!
EuroBioC2025
Community
Conference
Bioconductor
9 months ago
Maria Doyle
▴ 110
0
votes
3
replies
672
views
batch effect removal for agilent microarray data
"
"Bioconductor"
Bioconductor
9 months ago
gaye.yilmaz
• 0
0
votes
0
replies
602
views
Job:
Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
9 months ago
Wolfgang Huber
★ 13k
0
votes
5
replies
1.8k
views
For some reason I can't update BiocManager to 3.20
Bioconductor
updated 9 months ago by
shepherl
4.2k • written 9 months ago by
azm.ana2
• 0
0
votes
0
replies
486
views
News:
GBCC2025 Abstract Submissions & Registration Now Open!
Community
Conference
GBCC2025
Bioconductor
10 months ago
Maria Doyle
▴ 110
0
votes
0
replies
284
views
News:
Announcing the GBCC2025 Logo Design Winner!
Community
Conference
GBCC2025
Bioconductor
10 months ago
Maria Doyle
▴ 110
910 results • Page
1 of 19
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA
by
Gordon Smyth
53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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