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43
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Allele frequencies for ALL alleles of one SNP ?
Bioconductor
2 days ago Abiologist • 0
10
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7
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1.7k
views
Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 4 days ago by 4.1k • written 21 months ago by ▴ 50
1
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0
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177
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News: Bioconductor 3.20 is Released!
Bioconductor Release Software
16 days ago shepherl 4.1k
0
votes
0
replies
100
views
News: Announcing the GBCC2025 Logo Design Contest!
Conference Community Galaxy GBCC2025 Bioconductor
21 days ago Maria Doyle ▴ 90
1
vote
3
replies
524
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Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 23 days ago by 67k • written 24 days ago by • 0
0
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0
replies
91
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News: List of Deprecated Packages for Bioc3.20
Devel Bioconductor Release
25 days ago • updated 22 days ago shepherl 4.1k
1
vote
2
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468
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DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2 Bioconductor
updated 6 weeks ago by 42k • written 8 weeks ago by ▴ 10
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0
replies
161
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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
7 weeks ago Maria Doyle ▴ 90
1
vote
8
replies
405
views
Can't post a question?
Bioconductor
written 7 weeks ago by • 0
2
votes
2
replies
343
views
How to read OSCA book?
BIOCON OSCA Bioconductor
8 weeks ago zr • 0
1
vote
2
replies
338
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WARNING: No Bioconductor dependencies detected.
Bioconductor Biocon
9 weeks ago katja.danielzik • 0
0
votes
2
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379
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concentration tables suitable as input for new packages?
Bioconductor
9 weeks ago katja.danielzik • 0
2
votes
0
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348
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
9 weeks ago Maria Doyle ▴ 90
0
votes
5
replies
599
views
ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor clusterProfiler
updated 7 weeks ago by ▴ 760 • written 9 weeks ago by • 0
0
votes
0
replies
379
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News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
10 weeks ago Maria Doyle ▴ 90
0
votes
1
reply
422
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Unable to install/use limma
limma Bioconductor
updated 10 weeks ago by 67k • written 10 weeks ago by • 0
1
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2
replies
349
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Review process for delivering R packages
Bioconductor
11 weeks ago XFWu • 0
0
votes
1
reply
340
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News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
11 weeks ago Maria Doyle ▴ 90
1
vote
3
replies
690
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Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 12 weeks ago by • 0
0
votes
0
replies
320
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Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS AI Bioconductor
updated 11 weeks ago by ▴ 10 • written 12 weeks ago by ▴ 180
0
votes
0
replies
232
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BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024 Community Conference Bioconductor
12 weeks ago Maria Doyle ▴ 90
0
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0
replies
260
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News: EuroBioC Updates: Important Deadlines
Conference EuroBioC2024 Bioconductor Community EuroBioC
3 months ago Maria Doyle ▴ 90
2
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4
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438
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Bioconductor Submission question
Bioconductor
3 months ago XFWu • 0
0
votes
0
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217
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News: Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB CAB Bioconductor
3 months ago shepherl 4.1k
0
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0
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233
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community Conference Bioconductor EuroBioC2024
3 months ago Maria Doyle ▴ 90
0
votes
4
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669
views
featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts Subread Bioconductor
4 months ago • updated 3 months ago Jessica • 0
1
vote
0
replies
482
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News: Bioconductor Package Download Rate Limitation (HTTP 429)
downloads http429 http Bioconductor
3 months ago shepherl 4.1k
0
votes
2
replies
404
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Installing Bioconductor
Bioconductor
updated 4 months ago by ▴ 760 • written 4 months ago by • 0
0
votes
0
replies
269
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News: EuroBioC2024 Carpentries workshops Sep 2-3
Community Workshop Bioconductor EuroBioC2024
4 months ago Maria Doyle ▴ 90
0
votes
0
replies
260
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News: BioC2024 in-person registration closes soon (July 10)
BioC2024 Conference Bioconductor Community
4 months ago Maria Doyle ▴ 90
0
votes
0
replies
309
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Difference in Predictive component of PLS and OPLS Model
Metabolomics plotGrouper Bioconductor ropls PLSDAbatch
4 months ago devarti.mahakalkar • 0
0
votes
3
replies
438
views
How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata Bioconductor
4 months ago Abiologist • 0
2
votes
2
replies
4.9k
views
Unable to install the package "tissuesGeneExpression"
bioconductor
updated 4 months ago by • 0 • written 7.3 years ago by ▴ 10
0
votes
1
reply
328
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BiomaRt listAttributes - which are external ?
Bioconductor getBM
updated 4 months ago by 67k • written 4 months ago by • 0
4
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2
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658
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Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor featurecounts subread
5 months ago Rachael • 0
1
vote
5
replies
1.2k
views
Issues with installing Bioconductor packages (eg GEOquery)
GEOquery Bioconductor
updated 5 months ago by ★ 4.5k • written 5 months ago by • 0
0
votes
1
reply
291
views
How to access the Bioconductor in Windows
Bioconductor
updated 5 months ago by ★ 4.5k • written 5 months ago by • 0
0
votes
0
replies
249
views
EuroBioC2024 Registration is Open!
Community Conference Bioconductor EuroBioC2024
5 months ago Maria Doyle ▴ 90
0
votes
3
replies
1.1k
views
ChAMP not available for bioconductor 3.19
Bioconductor ChAMP
updated 5 months ago by 4.1k • written 5 months ago by • 0
0
votes
0
replies
248
views
News: Legacy Bioconductor Installation
Installation Bioconductor
5 months ago shepherl 4.1k
0
votes
0
replies
293
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News: Online course: Network Analysis in Systems Biology with R/Bioconductor
SystemsBiology Bioconductor Network
5 months ago info ▴ 10
0
votes
0
replies
257
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News: Bioconductor Build System
Builds Bioconductor
5 months ago shepherl 4.1k
0
votes
0
replies
333
views
News: BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
BioC2024 Conference Bioconductor Community
5 months ago Maria Doyle ▴ 90
0
votes
1
reply
371
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor dada2
5 months ago • updated 4 months ago abhisek001 • 0
0
votes
6
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943
views
Running ENmix with mouse methylation manifest: readidat error - Error in readmanifest(manifestfile) : length(control.line) == 1 && is.integer(cont…
ENmix Bioconductor
updated 5 months ago by • 0 • written 5 months ago by ▴ 10
3
votes
5
replies
851
views
Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db Bioconductor
6 months ago Patadù ▴ 20
1
vote
0
replies
602
views
News: Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition Awards Bioconductor Bioc204
7 months ago • updated 6 months ago shepherl 4.1k
0
votes
1
reply
278
views
Recovering my account credentials on Bioconductor
Bioconductor
updated 6 months ago by 4.1k • written 6 months ago by • 0
4
votes
0
replies
761
views
News: Bioconductor 3.19 is Released!
Release Bioconductor Packages Software
6 months ago shepherl 4.1k
0
votes
0
replies
311
views
News: BioC2024 deadlines approaching
BioC2024 Bioconductor Community
6 months ago Maria Doyle ▴ 90
50 results • Page 1 of 1
Recent ...
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
Votes
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
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