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Package developing and interoperation with Bioconductor
Package Bioconductor
updated 5 hours ago by 4.1k • written 6 hours ago by • 0
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126
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News: EuroBioC2025: Abstract Submissions Open!
EuroBioC2025 Community Conference Bioconductor
5 weeks ago Maria Doyle ▴ 100
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3
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989
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News: EuroBioC2023 abstract submission is open!
presentation EuroBioC2023 Conference community Bioconductor
updated 21 days ago by • 0 • written 2.1 years ago by ▴ 100
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3
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414
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batch effect removal for agilent microarray data
" "Bioconductor" Bioconductor
5 weeks ago gaye.yilmaz • 0
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145
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Job: Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
5 weeks ago Wolfgang Huber ★ 13k
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5
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755
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For some reason I can't update BiocManager to 3.20
Bioconductor
updated 5 weeks ago by 4.1k • written 6 weeks ago by • 0
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87
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News: GBCC2025 Abstract Submissions & Registration Now Open!
Community Conference GBCC2025 Bioconductor
6 weeks ago Maria Doyle ▴ 100
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91
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News: Announcing the GBCC2025 Logo Design Winner!
Community Conference GBCC2025 Bioconductor
8 weeks ago Maria Doyle ▴ 100
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226
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News: Bioconductor Course, Kenya 2025: Applications Open!
Events Community Training Africa Bioconductor
8 weeks ago Maria Doyle ▴ 100
0
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3
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1.3k
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News: EuroBioC2023 abstract submission closing soon!
presentation EuroBioc2023 Conference community Bioconductor
written 23 months ago by ▴ 100
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5
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1.3k
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News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
updated 3 months ago by • 0 • written 13 months ago by ▴ 100
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378
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Build error on kunpeng2 Linux aarch64
Bioconductor
updated 12 weeks ago by • 0 • written 3 months ago by • 0
2
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420
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bioconductor packages on bioconda
Bioconductor
updated 4 months ago by 68k • written 4 months ago by • 0
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3
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609
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Allele frequencies for ALL alleles of one SNP ?
Bioconductor
4 months ago Abiologist • 0
10
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Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 4 months ago by 4.1k • written 2.2 years ago by ▴ 50
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747
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News: Bioconductor 3.20 is Released!
Bioconductor Release Software
4 months ago shepherl 4.1k
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275
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News: Announcing the GBCC2025 Logo Design Contest!
Conference Community Galaxy GBCC2025 Bioconductor
5 months ago Maria Doyle ▴ 100
1
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3
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824
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Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 5 months ago by 68k • written 5 months ago by • 0
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0
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288
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News: List of Deprecated Packages for Bioc3.20
Devel Bioconductor Release
5 months ago shepherl 4.1k
1
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2
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720
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DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2 Bioconductor
updated 6 months ago by 43k • written 6 months ago by ▴ 10
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289
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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
6 months ago Maria Doyle ▴ 100
2
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9
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1.3k
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Can't post a question?
Bioconductor
updated 14 days ago by • 0 • written 6 months ago by • 0
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514
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How to read OSCA book?
BIOCON OSCA Bioconductor
6 months ago zr • 0
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508
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WARNING: No Bioconductor dependencies detected.
Bioconductor Biocon
6 months ago katja.danielzik • 0
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638
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concentration tables suitable as input for new packages?
Bioconductor
written 6 months ago by • 0
2
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645
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
6 months ago Maria Doyle ▴ 100
0
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5
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1.0k
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ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor clusterProfiler
updated 6 months ago by ▴ 760 • written 6 months ago by • 0
0
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1
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988
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News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
written 6 months ago by ▴ 100
0
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1
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1.3k
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Unable to install/use limma
limma Bioconductor
updated 6 months ago by 68k • written 6 months ago by • 0
1
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474
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Review process for delivering R packages
Bioconductor
7 months ago XFWu • 0
0
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490
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News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
7 months ago Maria Doyle ▴ 100
1
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3
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1.1k
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Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 7 months ago by • 0
0
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0
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453
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Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS AI Bioconductor
updated 7 months ago by ▴ 10 • written 7 months ago by ▴ 180
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342
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BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024 Community Conference Bioconductor
7 months ago Maria Doyle ▴ 100
0
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405
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News: EuroBioC Updates: Important Deadlines
Conference EuroBioC2024 Bioconductor Community EuroBioC
7 months ago Maria Doyle ▴ 100
2
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4
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588
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Bioconductor Submission question
Bioconductor
7 months ago XFWu • 0
0
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329
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News: Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB CAB Bioconductor
7 months ago shepherl 4.1k
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341
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community Conference Bioconductor EuroBioC2024
7 months ago Maria Doyle ▴ 100
0
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4
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881
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featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts Subread Bioconductor
8 months ago • updated 7 months ago Jessica • 0
1
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618
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News: Bioconductor Package Download Rate Limitation (HTTP 429)
downloads http429 http Bioconductor
8 months ago shepherl 4.1k
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2
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868
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Installing Bioconductor
Bioconductor
updated 8 months ago by ▴ 760 • written 8 months ago by • 0
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379
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News: EuroBioC2024 Carpentries workshops Sep 2-3
Community Workshop Bioconductor EuroBioC2024
8 months ago Maria Doyle ▴ 100
0
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0
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372
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News: BioC2024 in-person registration closes soon (July 10)
BioC2024 Conference Bioconductor Community
8 months ago Maria Doyle ▴ 100
0
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0
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451
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Difference in Predictive component of PLS and OPLS Model
Metabolomics plotGrouper Bioconductor ropls PLSDAbatch
8 months ago devarti.mahakalkar • 0
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3
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662
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How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata Bioconductor
8 months ago Abiologist • 0
2
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2
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5.2k
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Unable to install the package "tissuesGeneExpression"
bioconductor
updated 9 months ago by • 0 • written 7.7 years ago by ▴ 10
0
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1
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513
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BiomaRt listAttributes - which are external ?
Bioconductor getBM
updated 9 months ago by 68k • written 9 months ago by • 0
4
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1.2k
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Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor featurecounts subread
9 months ago Rachael • 0
1
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5
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2.2k
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Issues with installing Bioconductor packages (eg GEOquery)
GEOquery Bioconductor
updated 9 months ago by ★ 4.8k • written 9 months ago by • 0
0
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398
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How to access the Bioconductor in Windows
Bioconductor
updated 9 months ago by ★ 4.8k • written 9 months ago by • 0
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Comment: Package developing and interoperation with Bioconductor by shepherl 4.1k
Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0
1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …
Comment: Validity of SingleR with very small bulk RNAseq reference by Rohit • 0
Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge
Comment: CpGs with genomic positions greater than the chromosome size in EPICv2? by Joshua Llano • 0
Thank you for your reply James. I was worried that it was my mistake.
Comment: Annotation package for Manduca sexta by GA ▴ 10
Thank you!
Votes
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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