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News: Bioconductor Board Nominations Open
TAB Bioconductor CAB
4 weeks ago • updated 14 days ago shepherl 4.2k
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109
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Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO Bioconductor Arabidopsis_thaliana_Data
updated 4 days ago by 43k • written 4 weeks ago by • 0
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119
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News: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
5 weeks ago Wei Shi ★ 3.6k
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3
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2.1k
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Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-derived metabolic measures and various traits
limma Bioconductor Metabolomics
updated 6 weeks ago by 52k • written 7 weeks ago by • 0
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2
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906
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Starting with a clean bioconductor rstudio container
Bioconductor
updated 8 weeks ago by ★ 4.9k • written 8 weeks ago by • 0
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9
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13k
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Bioconductor version cannot be validated
BiocManager Bioconductor
updated 10 weeks ago by • 0 • written 4.0 years ago by ▴ 10
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Job: Lab Head positions at the WEHI, Melbourne, Australia
JobPosting Bioconductor
10 weeks ago Gordon Smyth 52k
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3
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8.1k
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Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 15 days ago by • 0 • written 23 months ago by • 0
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418
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GBCC2025: New Scholarship Opportunities Available!
Community Conference GBCC2025 Bioconductor
updated 10 weeks ago by • 0 • written 12 weeks ago by ▴ 100
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349
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Best tximport quant.genes.sf
tximport tximeta Bioconductor
updated 3 months ago by ★ 4.9k • written 3 months ago by • 0
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759
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Version conflict when pushing to scQTLtools devel branch
Bioconductor
written 4 months ago by • 0
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Package developing and interoperation with Bioconductor
Package Bioconductor
written 4 months ago by • 0
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2.1k
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News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
written 18 months ago by ▴ 100
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632
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News: List of Deprecated Packages for Bioc3.20
Release Devel Bioconductor
10 months ago • updated 4 months ago shepherl 4.2k
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419
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News: EuroBioC2025: Abstract Submissions Open!
EuroBioC2025 Community Conference Bioconductor
6 months ago Maria Doyle ▴ 100
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1.7k
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News: EuroBioC2023 abstract submission is open!
presentation EuroBioC2023 Conference community Bioconductor
updated 3 months ago by • 0 • written 2.5 years ago by ▴ 100
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3
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582
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batch effect removal for agilent microarray data
" "Bioconductor" Bioconductor
6 months ago gaye.yilmaz • 0
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370
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Job: Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
6 months ago Wolfgang Huber ★ 13k
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5
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1.6k
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For some reason I can't update BiocManager to 3.20
Bioconductor
updated 6 months ago by 4.2k • written 6 months ago by • 0
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296
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News: GBCC2025 Abstract Submissions & Registration Now Open!
Community Conference GBCC2025 Bioconductor
6 months ago Maria Doyle ▴ 100
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220
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News: Announcing the GBCC2025 Logo Design Winner!
Community Conference GBCC2025 Bioconductor
6 months ago Maria Doyle ▴ 100
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News: Bioconductor Course, Kenya 2025: Applications Open!
Events Community Training Africa Bioconductor
6 months ago Maria Doyle ▴ 100
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2.1k
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News: EuroBioC2023 abstract submission closing soon!
presentation EuroBioc2023 Conference community Bioconductor
written 2.3 years ago by ▴ 100
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Build error on kunpeng2 Linux aarch64
Bioconductor
updated 7 months ago by • 0 • written 8 months ago by • 0
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741
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bioconductor packages on bioconda
Bioconductor
updated 8 months ago by 68k • written 8 months ago by • 0
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930
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Allele frequencies for ALL alleles of one SNP ?
Bioconductor
9 months ago Abiologist • 0
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Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 9 months ago by 4.2k • written 2.5 years ago by ▴ 50
1
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1.1k
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News: Bioconductor 3.20 is Released!
Bioconductor Release Software
9 months ago shepherl 4.2k
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470
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News: Announcing the GBCC2025 Logo Design Contest!
Conference Community Galaxy GBCC2025 Bioconductor
9 months ago Maria Doyle ▴ 100
1
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3
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1.1k
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Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 10 months ago by 68k • written 10 months ago by • 0
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942
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DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2 Bioconductor
updated 10 months ago by 43k • written 11 months ago by ▴ 10
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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
10 months ago Maria Doyle ▴ 100
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1.6k
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Can't post a question?
Bioconductor
updated 5 months ago by • 0 • written 10 months ago by • 0
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704
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How to read OSCA book?
BIOCON OSCA Bioconductor
11 months ago zr • 0
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WARNING: No Bioconductor dependencies detected.
Bioconductor Biocon
11 months ago katja.danielzik • 0
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789
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concentration tables suitable as input for new packages?
Bioconductor
written 11 months ago by • 0
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902
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
11 months ago Maria Doyle ▴ 100
0
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5
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1.3k
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ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor clusterProfiler
updated 10 months ago by ▴ 760 • written 11 months ago by • 0
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3
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1.9k
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News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
updated 3 months ago by • 0 • written 11 months ago by ▴ 100
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1
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2.0k
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Unable to install/use limma
limma Bioconductor
updated 11 months ago by 68k • written 11 months ago by • 0
1
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2
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605
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Review process for delivering R packages
Bioconductor
11 months ago XFWu • 0
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668
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News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
11 months ago Maria Doyle ▴ 100
1
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1.4k
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Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 12 months ago by • 0
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Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS AI Bioconductor
updated 11 months ago by ▴ 10 • written 12 months ago by ▴ 180
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465
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BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024 Community Conference Bioconductor
12 months ago Maria Doyle ▴ 100
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585
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News: EuroBioC Updates: Important Deadlines
Conference EuroBioC2024 Bioconductor Community EuroBioC
12 months ago Maria Doyle ▴ 100
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4
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755
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Bioconductor Submission question
Bioconductor
12 months ago XFWu • 0
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479
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News: Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB CAB Bioconductor
12 months ago shepherl 4.2k
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458
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community Conference Bioconductor EuroBioC2024
12 months ago Maria Doyle ▴ 100
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4
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1.1k
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featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts Subread Bioconductor
13 months ago • updated 12 months ago Jessica • 0
880 results • Page 1 of 18
Recent ...
Replies
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by Raya • 0
Thank you so much! Here are the steps we took, as well as the resulting coldata for the ads object, as well as the sce object we converted …
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations by Aurélie • 0
Thank you so much!
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations by Aurélie • 0
Yes, I know. This was just to get a simple example ;-).
Comment: Getting way too many DEGs with LRT for time-series RNA-seq! by James W. MacDonald 68k
I don't use `DESeq2` for RNA-Seq analyses, but it's my understanding that `lfcShrink` is meant only for plotting and other visualizations r…
Comment: Are voomByGroup and voomLmFit compatible? by richardallenfriedmanbrooklyn ▴ 30
Gordon, Thank you for the clarification. Best wishes, Rich
Votes
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
Answer: Are voomByGroup and voomLmFit compatible?
Answer: p-adjusted values in multiple comparisons
Comment: p-adjusted values in multiple comparisons
Answer: p-adjusted values in multiple comparisons
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