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bioconductor
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Package developing and interoperation with Bioconductor
Package
Bioconductor
updated 5 hours ago by
shepherl
4.1k • written 6 hours ago by
slizchap
• 0
0
votes
0
replies
126
views
News:
EuroBioC2025: Abstract Submissions Open!
EuroBioC2025
Community
Conference
Bioconductor
5 weeks ago
Maria Doyle
▴ 100
0
votes
3
replies
989
views
News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
updated 21 days ago by
ht
• 0 • written 2.1 years ago by
Maria Doyle
▴ 100
0
votes
3
replies
414
views
batch effect removal for agilent microarray data
"
"Bioconductor"
Bioconductor
5 weeks ago
gaye.yilmaz
• 0
0
votes
0
replies
145
views
Job:
Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
5 weeks ago
Wolfgang Huber
★ 13k
0
votes
5
replies
755
views
For some reason I can't update BiocManager to 3.20
Bioconductor
updated 5 weeks ago by
shepherl
4.1k • written 6 weeks ago by
azm.ana2
• 0
0
votes
0
replies
87
views
News:
GBCC2025 Abstract Submissions & Registration Now Open!
Community
Conference
GBCC2025
Bioconductor
6 weeks ago
Maria Doyle
▴ 100
0
votes
0
replies
91
views
News:
Announcing the GBCC2025 Logo Design Winner!
Community
Conference
GBCC2025
Bioconductor
8 weeks ago
Maria Doyle
▴ 100
1
vote
0
replies
226
views
News:
Bioconductor Course, Kenya 2025: Applications Open!
Events
Community
Training
Africa
Bioconductor
8 weeks ago
Maria Doyle
▴ 100
0
votes
3
replies
1.3k
views
News:
EuroBioC2023 abstract submission closing soon!
presentation
EuroBioc2023
Conference
community
Bioconductor
written 23 months ago by
Maria Doyle
▴ 100
0
votes
5
replies
1.3k
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
updated 3 months ago by
Alan Downey
• 0 • written 13 months ago by
Maria Doyle
▴ 100
0
votes
2
replies
378
views
Build error on kunpeng2 Linux aarch64
Bioconductor
updated 12 weeks ago by
wise
• 0 • written 3 months ago by
Hongxiang
• 0
2
votes
1
reply
420
views
bioconductor packages on bioconda
Bioconductor
updated 4 months ago by
James W. MacDonald
68k • written 4 months ago by
risch.vinzent
• 0
1
vote
3
replies
609
views
Allele frequencies for ALL alleles of one SNP ?
Bioconductor
4 months ago
Abiologist
• 0
10
votes
7
replies
2.0k
views
Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 4 months ago by
shepherl
4.1k • written 2.2 years ago by
L
▴ 50
1
vote
0
replies
747
views
News:
Bioconductor 3.20 is Released!
Bioconductor
Release
Software
4 months ago
shepherl
4.1k
0
votes
0
replies
275
views
News:
Announcing the GBCC2025 Logo Design Contest!
Conference
Community
Galaxy
GBCC2025
Bioconductor
5 months ago
Maria Doyle
▴ 100
1
vote
3
replies
824
views
Tutorial regarding metabolomics with R
Bioconductor
Metabolomics
xcms
updated 5 months ago by
James W. MacDonald
68k • written 5 months ago by
abhisek001
• 0
0
votes
0
replies
288
views
News:
List of Deprecated Packages for Bioc3.20
Devel
Bioconductor
Release
5 months ago
shepherl
4.1k
1
vote
2
replies
720
views
DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2
Bioconductor
updated 6 months ago by
Michael Love
43k • written 6 months ago by
JT
▴ 10
0
votes
0
replies
289
views
News:
Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries
Community
Teaching
Bioconductor
6 months ago
Maria Doyle
▴ 100
2
votes
9
replies
1.3k
views
Can't post a question?
Bioconductor
updated 14 days ago by
DavideSant
• 0 • written 6 months ago by
blmurphy
• 0
2
votes
2
replies
514
views
How to read OSCA book?
BIOCON
OSCA
Bioconductor
6 months ago
zr
• 0
1
vote
2
replies
508
views
WARNING: No Bioconductor dependencies detected.
Bioconductor
Biocon
6 months ago
katja.danielzik
• 0
0
votes
3
replies
638
views
concentration tables suitable as input for new packages?
Bioconductor
written 6 months ago by
katja.danielzik
• 0
2
votes
0
replies
645
views
News:
Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025
Conference
Bioconductor
Community
6 months ago
Maria Doyle
▴ 100
0
votes
5
replies
1.0k
views
ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor
clusterProfiler
updated 6 months ago by
Lluís Revilla Sancho
▴ 760 • written 6 months ago by
semra
• 0
0
votes
1
reply
988
views
News:
Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference
Bioconductor
Community
written 6 months ago by
Maria Doyle
▴ 100
0
votes
1
reply
1.3k
views
Unable to install/use limma
limma
Bioconductor
updated 6 months ago by
James W. MacDonald
68k • written 6 months ago by
Jennifer
• 0
1
vote
2
replies
474
views
Review process for delivering R packages
Bioconductor
7 months ago
XFWu
• 0
0
votes
1
reply
490
views
News:
BioCAsia 2024 Registration Now Open!
BioCAsia2024
Conference
Community
Bioconductor
7 months ago
Maria Doyle
▴ 100
1
vote
3
replies
1.1k
views
Non-zero exit status error when installing GenomeInfoDbData
DECIPHER
GenomeInfoDbData
Bioconductor
GenomeInfoDb
written 7 months ago by
dbjohnson7
• 0
0
votes
0
replies
453
views
Job:
PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS
AI
Bioconductor
updated 7 months ago by
Tyler Sagendorf
▴ 10 • written 7 months ago by
Gerhard Thallinger
▴ 180
0
votes
0
replies
342
views
BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024
Community
Conference
Bioconductor
7 months ago
Maria Doyle
▴ 100
0
votes
0
replies
405
views
News:
EuroBioC Updates: Important Deadlines
Conference
EuroBioC2024
Bioconductor
Community
EuroBioC
7 months ago
Maria Doyle
▴ 100
2
votes
4
replies
588
views
Bioconductor Submission question
Bioconductor
7 months ago
XFWu
• 0
0
votes
0
replies
329
views
News:
Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB
CAB
Bioconductor
7 months ago
shepherl
4.1k
0
votes
0
replies
341
views
EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community
Conference
Bioconductor
EuroBioC2024
7 months ago
Maria Doyle
▴ 100
0
votes
4
replies
881
views
featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts
Subread
Bioconductor
8 months ago • updated 7 months ago
Jessica
• 0
1
vote
0
replies
618
views
News:
Bioconductor Package Download Rate Limitation (HTTP 429)
downloads
http429
http
Bioconductor
8 months ago
shepherl
4.1k
0
votes
2
replies
868
views
Installing Bioconductor
Bioconductor
updated 8 months ago by
Lluís Revilla Sancho
▴ 760 • written 8 months ago by
mariyahgeorge14
• 0
0
votes
0
replies
379
views
News:
EuroBioC2024 Carpentries workshops Sep 2-3
Community
Workshop
Bioconductor
EuroBioC2024
8 months ago
Maria Doyle
▴ 100
0
votes
0
replies
372
views
News:
BioC2024 in-person registration closes soon (July 10)
BioC2024
Conference
Bioconductor
Community
8 months ago
Maria Doyle
▴ 100
0
votes
0
replies
451
views
Difference in Predictive component of PLS and OPLS Model
Metabolomics
plotGrouper
Bioconductor
ropls
PLSDAbatch
8 months ago
devarti.mahakalkar
• 0
0
votes
3
replies
662
views
How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata
Bioconductor
8 months ago
Abiologist
• 0
2
votes
2
replies
5.2k
views
Unable to install the package "tissuesGeneExpression"
bioconductor
updated 9 months ago by
Muhammad Abdullah
• 0 • written 7.7 years ago by
mdroog
▴ 10
0
votes
1
reply
513
views
BiomaRt listAttributes - which are external ?
Bioconductor
getBM
updated 9 months ago by
James W. MacDonald
68k • written 9 months ago by
Abiologist
• 0
4
votes
2
replies
1.2k
views
Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor
featurecounts
subread
9 months ago
Rachael
• 0
1
vote
5
replies
2.2k
views
Issues with installing Bioconductor packages (eg GEOquery)
GEOquery
Bioconductor
updated 9 months ago by
ATpoint
★ 4.8k • written 9 months ago by
Isabel
• 0
0
votes
1
reply
398
views
How to access the Bioconductor in Windows
Bioconductor
updated 9 months ago by
ATpoint
★ 4.8k • written 9 months ago by
fahad.rashid
• 0
50 results • Page
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Comment: Package developing and interoperation with Bioconductor
by
shepherl
4.1k
Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files
by
Sofia
• 0
1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …
Comment: Validity of SingleR with very small bulk RNAseq reference
by
Rohit
• 0
Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge
Comment: CpGs with genomic positions greater than the chromosome size in EPICv2?
by
Joshua Llano
• 0
Thank you for your reply James. I was worried that it was my mistake.
Comment: Annotation package for Manduca sexta
by
GA
▴ 10
Thank you!
Votes
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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