Showing : biomaRT • reset
2
votes
4
replies
182
views
Converting Probe IDs to HGNC symbols
Annotation biomaRt GEOquery
written 8 days ago by ▴ 10
0
votes
6
replies
2.8k
views
Ensembl site unresponsive via biomaRt
biomaRt
written 9 months ago by • 0
1
vote
1
reply
251
views
News: Upcoming Ensembl API and data access changes - new blog post available
ensembl mart biomaRt ensembldb
written 5 weeks ago by ▴ 10
0
votes
1
reply
372
views
Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 7 weeks ago by ★ 4.0k • written 4 months ago by • 0
5
votes
3
replies
490
views
Issues with downloading biomaRt - SeqInfo and S4 Vectors
S4Vectors biomaRt Seqinfo
updated 9 weeks ago by 68k • written 9 weeks ago by ▴ 10
0
votes
1
reply
254
views
News: Ensembl 115 has been released!
ensembl ensembldb biomaRt
written 3 months ago by ▴ 10
1
vote
3
replies
1.5k
views
News: Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt ensembldb
written 8 months ago by ▴ 30
1
vote
1
reply
701
views
Biomart server error
biomaRt BioMartGOGeneSets
updated 7 months ago by 68k • written 7 months ago by • 0
0
votes
3
replies
891
views
getBM from biomaRt inconsistencies found with .gtf files across multiple species
.gtf biomaRt Ensembl
updated 9 months ago by ★ 6.6k • written 9 months ago by ▴ 20
3
votes
5
replies
2.2k
views
Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma edgeR biomaRt
updated 12 months ago by 68k • written 12 months ago by ▴ 10
0
votes
2
replies
1.8k
views
Error using useMart or useEnsembl
biomaRt
updated 12 months ago by 68k • written 12 months ago by • 0
0
votes
4
replies
2.1k
views
Biomart and ensembl not working?
ensembldb biomaRt
updated 12 months ago by 68k • written 12 months ago by • 0
3
votes
9
replies
2.3k
views
Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) returning drastically different numbers of transcripts
AnnotationDbi EnsDb.Mmusculus.v79 biomaRt org.Mm.eg.db
updated 11 months ago by • 0 • written 12 months ago by • 0
4
votes
9
replies
3.1k
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus biomaRt
updated 13 months ago by 68k • written 14 months ago by ▴ 20
0
votes
0
replies
1.1k
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
15 months ago Ensembl_Jorge ▴ 10
0
votes
1
reply
881
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 15 months ago by ★ 6.6k • written 15 months ago by • 0
2
votes
2
replies
1.8k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
15 months ago 2044291597 • 0
1
vote
3
replies
1.9k
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 16 months ago by 68k • written 23 months ago by ▴ 10
1
vote
4
replies
2.0k
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN biomaRt
updated 14 months ago by • 0 • written 16 months ago by • 0
1
vote
4
replies
1.6k
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
17 months ago kschecht • 0
2
votes
8
replies
4.0k
views
biomaRt getLDS error
biomaRt
17 months ago mark.dunning ▴ 20
1
vote
2
replies
1.6k
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
18 months ago Svitlana ▴ 10
0
votes
0
replies
661
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
19 months ago Reese • 0
0
votes
2
replies
1.1k
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
20 months ago • updated 19 months ago landenshanie ▴ 40
0
votes
0
replies
597
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
20 months ago Abiologist • 0
1
vote
0
replies
1.1k
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
20 months ago Aleena_Ensembl ▴ 30
1
vote
3
replies
985
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 21 months ago by 68k • written 21 months ago by ▴ 30
2
votes
2
replies
1.8k
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 21 months ago by 68k • written 21 months ago by • 0
0
votes
1
reply
906
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 21 months ago by 68k • written 21 months ago by • 0
0
votes
1
reply
2.0k
views
error in mapIds function
mapIds biomaRt
updated 22 months ago by 700 • written 22 months ago by • 0
0
votes
2
replies
1.5k
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
23 months ago eefernan5 • 0
3
votes
3
replies
17k
views
How to find rsID with biomaRt in R
biomaRt
updated 23 months ago by 68k • written 4.9 years ago by ▴ 10
0
votes
1
reply
748
views
biomaRt issue
biomaRt
updated 23 months ago by ★ 6.6k • written 23 months ago by • 0
1
vote
5
replies
2.3k
views
BiomaRt download data error
biomaRt
updated 23 months ago by ★ 6.6k • written 23 months ago by • 0
6
votes
9
replies
4.3k
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 23 months ago by • 0 • written 23 months ago by • 0
1
vote
1
reply
2.2k
views
Error with biomaRt
biomaRt
updated 24 months ago by ★ 6.6k • written 24 months ago by • 0
4
votes
2
replies
1.4k
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 24 months ago by ★ 4.1k • written 24 months ago by • 0
2
votes
2
replies
1.6k
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
24 months ago bd2000 ▴ 30
1
vote
0
replies
823
views
News: Ensembl 111 has been released
Ensembl biomaRt
2.0 years ago Benjamin ▴ 30
0
votes
2
replies
1.3k
views
Problem with loading ensembl version 105.
biomaRt
2.1 years ago RC • 0
0
votes
1
reply
2.2k
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
0
votes
3
replies
2.0k
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 2.1 years ago by ★ 3.4k • written 2.1 years ago by ▴ 30
4
votes
12
replies
2.6k
views
Ensembl down???
biomaRt
2.1 years ago bas_work ▴ 30
3
votes
2
replies
1.2k
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
2.1 years ago henrydionne ▴ 10
1
vote
2
replies
2.6k
views
How to find stop codons for a list of genes
stopcodon biomaRt
2.1 years ago Marek Gierlinski ▴ 30
0
votes
10
replies
2.0k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
2.2 years ago • updated 22 months ago ScafioRuo • 0
12
votes
10
replies
16k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 22 months ago by • 0 • written 2.2 years ago by ▴ 20
0
votes
3
replies
1.2k
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 2.2 years ago by 53k • written 2.2 years ago by • 0
1
vote
4
replies
1.5k
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
2.3 years ago andrew.b.kleist ▴ 10
7
votes
6
replies
9.4k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 2.3 years ago by 700 • written 3.4 years ago by ▴ 20
1,084 results • Page 1 of 22
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Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Answer: Incosistencies in buildSNNGraph() function
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
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