Showing : biomaRT • reset
0
votes
0
replies
98
views
News: Ensembl 115 has been released!
ensembl ensembldb biomaRt
6 weeks ago Ensembl_Jorge • 0
0
votes
0
replies
134
views
Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 8 weeks ago by 68k • written 8 weeks ago by • 0
1
vote
3
replies
1.3k
views
News: Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt ensembldb
written 5 months ago by ▴ 30
1
vote
1
reply
635
views
Biomart server error
biomaRt BioMartGOGeneSets
updated 5 months ago by 68k • written 5 months ago by • 0
0
votes
3
replies
804
views
getBM from biomaRt inconsistencies found with .gtf files across multiple species
.gtf biomaRt Ensembl
updated 7 months ago by ★ 6.6k • written 7 months ago by ▴ 20
0
votes
4
replies
2.1k
views
Ensembl site unresponsive via biomaRt
biomaRt
updated 6 months ago by • 0 • written 7 months ago by • 0
3
votes
5
replies
1.9k
views
Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma edgeR biomaRt
updated 9 months ago by 68k • written 9 months ago by ▴ 10
0
votes
2
replies
1.6k
views
Error using useMart or useEnsembl
biomaRt
updated 9 months ago by 68k • written 9 months ago by • 0
0
votes
4
replies
1.7k
views
Biomart and ensembl not working?
ensembldb biomaRt
updated 9 months ago by 68k • written 9 months ago by • 0
3
votes
9
replies
1.9k
views
Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) returning drastically different numbers of transcripts
AnnotationDbi EnsDb.Mmusculus.v79 biomaRt org.Mm.eg.db
updated 8 months ago by • 0 • written 9 months ago by • 0
4
votes
9
replies
2.9k
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus biomaRt
updated 10 months ago by 68k • written 12 months ago by ▴ 20
0
votes
0
replies
838
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
12 months ago Ensembl_Jorge • 0
0
votes
1
reply
750
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 13 months ago by ★ 6.6k • written 13 months ago by • 0
2
votes
2
replies
1.7k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
13 months ago 2044291597 • 0
1
vote
3
replies
1.8k
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 14 months ago by 68k • written 21 months ago by ▴ 10
1
vote
4
replies
1.7k
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN biomaRt
updated 11 months ago by • 0 • written 14 months ago by • 0
1
vote
4
replies
1.4k
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
14 months ago kschecht • 0
2
votes
8
replies
3.6k
views
biomaRt getLDS error
biomaRt
15 months ago mark.dunning ▴ 20
1
vote
2
replies
1.5k
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
16 months ago Svitlana ▴ 10
0
votes
0
replies
583
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
16 months ago Reese • 0
0
votes
2
replies
1.0k
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
17 months ago landenshanie ▴ 40
0
votes
0
replies
534
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets allele_freq biomaRt getBM
17 months ago Abiologist • 0
1
vote
0
replies
966
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
17 months ago Aleena_Ensembl ▴ 30
1
vote
3
replies
921
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 18 months ago by 68k • written 18 months ago by ▴ 30
2
votes
2
replies
1.5k
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 18 months ago by 68k • written 18 months ago by • 0
0
votes
1
reply
794
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 19 months ago by 68k • written 19 months ago by • 0
0
votes
1
reply
1.9k
views
error in mapIds function
mapIds biomaRt
updated 20 months ago by 700 • written 20 months ago by • 0
0
votes
2
replies
1.5k
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
20 months ago eefernan5 • 0
3
votes
3
replies
16k
views
How to find rsID with biomaRt in R
biomaRt
updated 21 months ago by 68k • written 4.7 years ago by ▴ 10
0
votes
1
reply
670
views
biomaRt issue
biomaRt
updated 21 months ago by ★ 6.6k • written 21 months ago by • 0
1
vote
5
replies
2.1k
views
BiomaRt download data error
biomaRt
updated 21 months ago by ★ 6.6k • written 21 months ago by • 0
6
votes
9
replies
4.0k
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 21 months ago by • 0 • written 21 months ago by • 0
1
vote
1
reply
2.1k
views
Error with biomaRt
biomaRt
updated 21 months ago by ★ 6.6k • written 21 months ago by • 0
4
votes
2
replies
1.3k
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 21 months ago by ★ 4.1k • written 21 months ago by • 0
2
votes
2
replies
1.5k
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
21 months ago bd2000 ▴ 30
1
vote
0
replies
743
views
News: Ensembl 111 has been released
Ensembl biomaRt
21 months ago Benjamin ▴ 30
0
votes
2
replies
1.2k
views
Problem with loading ensembl version 105.
biomaRt
22 months ago RC • 0
0
votes
1
reply
2.1k
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 23 months ago by 68k • written 23 months ago by • 0
0
votes
3
replies
1.8k
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 23 months ago by ★ 3.4k • written 23 months ago by ▴ 30
4
votes
12
replies
2.4k
views
Ensembl down???
biomaRt
23 months ago bas_work ▴ 30
3
votes
2
replies
1.1k
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
23 months ago henrydionne ▴ 10
1
vote
2
replies
2.4k
views
How to find stop codons for a list of genes
stopcodon biomaRt
23 months ago Marek Gierlinski ▴ 30
0
votes
10
replies
1.8k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
23 months ago • updated 20 months ago ScafioRuo • 0
12
votes
10
replies
16k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 19 months ago by • 0 • written 2.0 years ago by ▴ 20
0
votes
3
replies
1.1k
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 2.0 years ago by 53k • written 2.0 years ago by • 0
1
vote
4
replies
1.4k
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
2.1 years ago andrew.b.kleist ▴ 10
7
votes
6
replies
8.9k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 2.1 years ago by 700 • written 3.2 years ago by ▴ 20
0
votes
2
replies
955
views
Biomart - upstream region of 'coding'
biomaRt
updated 2.1 years ago by ★ 6.6k • written 2.1 years ago by ▴ 20
0
votes
0
replies
815
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
2.2 years ago ali.oghabian • 0
1
vote
5
replies
1.2k
views
Errors with makeTxDbFromBiomart
biomaRt
updated 2.2 years ago by 68k • written 2.2 years ago by ▴ 10
1,081 results • Page 1 of 22
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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