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Showing :
biomaRT
•
reset
0
votes
0
replies
61
views
News:
Ensembl 115 has been released!
ensembl
ensembldb
biomaRt
25 days ago
Ensembl_Jorge
• 0
0
votes
0
replies
106
views
Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 5 weeks ago by
James W. MacDonald
68k • written 5 weeks ago by
Jesus
• 0
1
vote
3
replies
1.3k
views
News:
Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt
ensembldb
written 5 months ago by
Aleena_Ensembl
▴ 30
1
vote
1
reply
620
views
Biomart server error
biomaRt
BioMartGOGeneSets
updated 4 months ago by
James W. MacDonald
68k • written 4 months ago by
tarek.mohamed
• 0
0
votes
3
replies
788
views
getBM from biomaRt inconsistencies found with .gtf files across multiple species
.gtf
biomaRt
Ensembl
updated 6 months ago by
Mike Smith
★ 6.6k • written 6 months ago by
Benjamin
▴ 20
0
votes
4
replies
2.1k
views
Ensembl site unresponsive via biomaRt
biomaRt
updated 5 months ago by
darylruiz6545
• 0 • written 6 months ago by
hebda
• 0
3
votes
5
replies
1.9k
views
Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma
edgeR
biomaRt
updated 8 months ago by
James W. MacDonald
68k • written 8 months ago by
Jonathan
▴ 10
0
votes
2
replies
1.5k
views
Error using useMart or useEnsembl
biomaRt
updated 8 months ago by
James W. MacDonald
68k • written 8 months ago by
rayanelkholdi
• 0
0
votes
4
replies
1.6k
views
Biomart and ensembl not working?
ensembldb
biomaRt
updated 8 months ago by
James W. MacDonald
68k • written 8 months ago by
Zuzer
• 0
3
votes
9
replies
1.9k
views
Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) returning drastically different numbers of transcripts
AnnotationDbi
EnsDb.Mmusculus.v79
biomaRt
org.Mm.eg.db
updated 8 months ago by
franknappi14
• 0 • written 9 months ago by
Nicholas
• 0
4
votes
9
replies
2.8k
views
biomaRt rnorvegicus_gene_ensembl not available anymore
Rattus_norvegicus
biomaRt
updated 9 months ago by
James W. MacDonald
68k • written 11 months ago by
Benjamin
▴ 20
0
votes
0
replies
785
views
News:
Ensembl 113 has been released
ensembl
ensembldb
mart
biomaRt
11 months ago
Ensembl_Jorge
• 0
0
votes
1
reply
730
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 12 months ago by
Mike Smith
★ 6.6k • written 12 months ago by
Abiologist
• 0
2
votes
2
replies
1.6k
views
Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
12 months ago
2044291597
• 0
1
vote
3
replies
1.7k
views
502 error biomaRt getLDS()
ensembldb
biomaRt
updated 13 months ago by
James W. MacDonald
68k • written 20 months ago by
Pez
▴ 10
1
vote
4
replies
1.7k
views
BiomaRt Possible Ensembl SSL connectivity problems detected.
PureCN
biomaRt
updated 11 months ago by
Adam
• 0 • written 13 months ago by
varga.luca
• 0
1
vote
4
replies
1.4k
views
How to Query Only SNPs from the biomaRt Variation Database
biomaRt
14 months ago
kschecht
• 0
2
votes
8
replies
3.6k
views
biomaRt getLDS error
biomaRt
14 months ago
mark.dunning
▴ 20
1
vote
2
replies
1.4k
views
Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connecting to incompatible version of BioMart.
biomaRt
15 months ago
Svitlana
▴ 10
0
votes
0
replies
566
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
16 months ago
Reese
• 0
0
votes
2
replies
983
views
Errors in chromosome annotation-biomaRt
org.Rn.eg.db
biomaRt
16 months ago
landenshanie
▴ 40
0
votes
0
replies
518
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets
allele_freq
biomaRt
getBM
17 months ago • updated 16 months ago
Abiologist
• 0
1
vote
0
replies
933
views
News:
Ensembl 112 has been released.
ensembldb
biomaRt
ensemblrelease
17 months ago
Aleena_Ensembl
▴ 30
1
vote
3
replies
909
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 17 months ago by
James W. MacDonald
68k • written 17 months ago by
bas_work
▴ 30
2
votes
2
replies
1.5k
views
OrgDb for maize
clusterProfiler
OrgDb
biomaRt
Zea_mays
updated 17 months ago by
James W. MacDonald
68k • written 17 months ago by
sansan
• 0
0
votes
1
reply
773
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 18 months ago by
James W. MacDonald
68k • written 18 months ago by
Reeya
• 0
0
votes
1
reply
1.9k
views
error in mapIds function
mapIds
biomaRt
updated 19 months ago by
Marcel Ramos
700 • written 19 months ago by
Regina
• 0
0
votes
2
replies
1.4k
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
20 months ago
eefernan5
• 0
3
votes
3
replies
16k
views
How to find rsID with biomaRt in R
biomaRt
updated 20 months ago by
James W. MacDonald
68k • written 4.6 years ago by
Federica
▴ 10
0
votes
1
reply
658
views
biomaRt issue
biomaRt
updated 20 months ago by
Mike Smith
★ 6.6k • written 20 months ago by
Fariz
• 0
1
vote
5
replies
2.1k
views
BiomaRt download data error
biomaRt
updated 20 months ago by
Mike Smith
★ 6.6k • written 20 months ago by
Max Bone
• 0
6
votes
9
replies
4.0k
views
biomaRt has encountered an unknown server error.
biomaRt
host
useEnsembl
updated 20 months ago by
alexander3
• 0 • written 20 months ago by
Amparo
• 0
1
vote
1
reply
2.1k
views
Error with biomaRt
biomaRt
updated 21 months ago by
Mike Smith
★ 6.6k • written 21 months ago by
goldenboy
• 0
4
votes
2
replies
1.2k
views
Enrichement with clusterProfiler and biomart
biomaRt
clusterProfiler
Zea_mays
updated 21 months ago by
Guido Hooiveld
★ 4.1k • written 21 months ago by
sansan
• 0
2
votes
2
replies
1.5k
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
21 months ago
bd2000
▴ 30
1
vote
0
replies
696
views
News:
Ensembl 111 has been released
Ensembl
biomaRt
21 months ago
Benjamin
▴ 30
0
votes
2
replies
1.2k
views
Problem with loading ensembl version 105.
biomaRt
21 months ago
RC
• 0
0
votes
1
reply
2.1k
views
biomaRt_getBM_Failed to collect lazy table
getBM
biomaRt
updated 22 months ago by
James W. MacDonald
68k • written 22 months ago by
ai.yaku
• 0
0
votes
3
replies
1.7k
views
Obtaining rsIDs with ENSG and variant ID information
rsid
biomaRt
updated 22 months ago by
Robert Castelo
★ 3.4k • written 22 months ago by
bd2000
▴ 30
4
votes
12
replies
2.4k
views
Ensembl down???
biomaRt
22 months ago
bas_work
▴ 30
3
votes
2
replies
1.1k
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl
biomaRt
22 months ago
henrydionne
▴ 10
1
vote
2
replies
2.3k
views
How to find stop codons for a list of genes
stopcodon
biomaRt
22 months ago
Marek Gierlinski
▴ 30
0
votes
10
replies
1.8k
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R
BioMart
biomaRt
23 months ago • updated 19 months ago
ScafioRuo
• 0
12
votes
10
replies
16k
views
biomaRt not working - lazy table error
error
lazy
R
biomaRt
table
updated 18 months ago by
juo5
• 0 • written 23 months ago by
Abhishek
▴ 20
0
votes
3
replies
1.1k
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 23 months ago by
Gordon Smyth
53k • written 23 months ago by
Marilyn
• 0
1
vote
4
replies
1.4k
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
2.0 years ago
andrew.b.kleist
▴ 10
7
votes
6
replies
8.8k
views
Conversion of UniProt to Ensembl
biomaRt
ensembldb
UniProt.ws
updated 2.0 years ago by
Marcel Ramos
700 • written 3.2 years ago by
Recep
▴ 20
0
votes
2
replies
943
views
Biomart - upstream region of 'coding'
biomaRt
updated 2.1 years ago by
Mike Smith
★ 6.6k • written 2.1 years ago by
andrebolerbarros
▴ 20
0
votes
0
replies
800
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
2.1 years ago
ali.oghabian
• 0
1
vote
5
replies
1.1k
views
Errors with makeTxDbFromBiomart
biomaRt
updated 2.2 years ago by
James W. MacDonald
68k • written 2.2 years ago by
Jerina
▴ 10
1,081 results • Page
1 of 22
Recent ...
Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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