Showing : biomaRt • reset
0
votes
3
replies
154
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 16 days ago by 65k • written 16 days ago by ▴ 30
2
votes
2
replies
190
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 16 days ago by 65k • written 17 days ago by • 0
0
votes
1
reply
145
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 4 weeks ago by 65k • written 4 weeks ago by • 0
0
votes
1
reply
294
views
error in mapIds function
mapIds biomaRt
updated 9 weeks ago by 690 • written 10 weeks ago by • 0
0
votes
2
replies
461
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
11 weeks ago eefernan5 • 0
3
votes
3
replies
9.4k
views
How to find rsID with biomaRt in R
biomaRt
updated 12 weeks ago by 65k • written 3.2 years ago by ▴ 10
1
vote
1
reply
227
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 11 weeks ago by • 0 • written 12 weeks ago by ▴ 10
0
votes
1
reply
223
views
biomaRt issue
biomaRt
updated 12 weeks ago by ★ 6.5k • written 12 weeks ago by • 0
1
vote
5
replies
431
views
BiomaRt download data error
biomaRt
updated 12 weeks ago by ★ 6.5k • written 12 weeks ago by • 0
6
votes
9
replies
767
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 3 months ago by • 0 • written 3 months ago by • 0
1
vote
1
reply
407
views
Error with biomaRt
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
4
votes
2
replies
366
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 3 months ago by ★ 3.9k • written 3 months ago by • 0
2
votes
2
replies
654
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
3 months ago bd2000 ▴ 30
1
vote
0
replies
210
views
News: Ensembl 111 has been released
Ensembl biomaRt
3 months ago Benjamin ▴ 30
0
votes
2
replies
400
views
Problem with loading ensembl version 105.
biomaRt
4 months ago RC • 0
0
votes
1
reply
708
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 5 months ago by 65k • written 5 months ago by • 0
0
votes
3
replies
386
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 5 months ago by ★ 3.3k • written 5 months ago by ▴ 30
4
votes
12
replies
968
views
Ensembl down???
biomaRt
5 months ago bas_work ▴ 30
3
votes
2
replies
424
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
5 months ago henrydionne ▴ 10
1
vote
2
replies
661
views
How to find stop codons for a list of genes
stopcodon biomaRt
5 months ago Marek Gierlinski ▴ 30
0
votes
10
replies
816
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
5 months ago • updated 9 weeks ago ScafioRuo • 0
10
votes
10
replies
7.0k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 6 weeks ago by • 0 • written 6 months ago by ▴ 10
0
votes
3
replies
470
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 6 months ago by 50k • written 6 months ago by • 0
1
vote
4
replies
673
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
7 months ago andrew.b.kleist ▴ 10
7
votes
6
replies
4.1k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 6 months ago by 690 • written 21 months ago by ▴ 20
0
votes
2
replies
367
views
Biomart - upstream region of 'coding'
biomaRt
updated 7 months ago by ★ 6.5k • written 7 months ago by ▴ 20
0
votes
0
replies
382
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
8 months ago ali.oghabian • 0
1
vote
5
replies
608
views
Errors with makeTxDbFromBiomart
biomaRt
updated 8 months ago by 65k • written 8 months ago by ▴ 10
3
votes
2
replies
1.1k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 8 months ago by ★ 3.9k • written 8 months ago by ▴ 10
0
votes
3
replies
781
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 8 months ago by 16k • written 9 months ago by • 0
1
vote
2
replies
611
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
9 months ago Miguel • 0
0
votes
1
reply
623
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 9 months ago by 65k • written 9 months ago by • 0
0
votes
1
reply
1.5k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 9 months ago by 41k • written 9 months ago by ▴ 30
0
votes
1
reply
831
views
multiple filters in biomaRt
biomaRt
updated 11 months ago by ▴ 10 • written 11 months ago by • 0
2
votes
4
replies
937
views
Use with_go along with other filters in getBM function
Annotation biomaRt
11 months ago RuBBiT0 ▴ 10
1
vote
2
replies
800
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by ★ 6.5k • written 11 months ago by • 0
0
votes
3
replies
564
views
BioMart Error message when pulling sequences
biomaRt bioma
updated 12 months ago by ★ 6.5k • written 12 months ago by • 0
0
votes
3
replies
1.4k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 12 months ago by ▴ 30
0
votes
1
reply
1.4k
views
biomaRt - NameSpace loading failed
biomaRt bioma
updated 12 months ago by ★ 6.5k • written 12 months ago by • 0
0
votes
3
replies
678
views
BiomaRt: problems annotating a list of DEGs from DESeq2
biomaRt
updated 12 months ago by 41k • written 13 months ago by • 0
0
votes
2
replies
1.1k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 13 months ago by ★ 2.0k • written 13 months ago by • 0
0
votes
3
replies
720
views
How to getting synonymous SNPs from BiomaRt before timing out?
biomaRt SNP
updated 13 months ago by 65k • written 13 months ago by • 0
0
votes
2
replies
774
views
Retrieving true orthologs between species BiomaRt
Orthologs BiomaRt
updated 13 months ago by 65k • written 14 months ago by • 0
0
votes
5
replies
2.3k
views
Is biomaRt down?
biomart
updated 14 months ago by • 0 • written 5.3 years ago by • 0
0
votes
4
replies
960
views
Write an annotated DESEQ2 counts CSV, pls help.
DESeq2 biomaRt R
14 months ago Dr. • 0
0
votes
0
replies
695
views
BiomaRt - Problem to access homolog lists
biomaRt ensembldb
15 months ago ginie.dub • 0
3
votes
3
replies
1.7k
views
transcript name mapping between human and mouse
biomaRt getLDS
updated 15 months ago by 65k • written 15 months ago by ▴ 20
5
votes
3
replies
1.4k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt ensembldb ensembl
18 months ago • updated 16 months ago jamie.gearing ▴ 60
1
vote
4
replies
723
views
mmc57bl6nj_gene_ensembl biomaRt
biomaRt
16 months ago Maryam • 0
1
vote
3
replies
837
views
Convert Chromosome postion to gene symbol
biomaRt ensembldb
16 months ago mbansal • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
Awards • All
Scholar to ATpoint ★ 4.1k
Popular Question to Ben ▴ 50
Popular Question to Sam ▴ 10
Popular Question to Gordon Smyth 50k
Popular Question to Zainab ▴ 10
Locations • All
France, 3 minutes ago
United States, 8 minutes ago
WEHI, Melbourne, Australia, 9 minutes ago
Belgium, 12 minutes ago
Germany, 12 minutes ago
Traffic: 578 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6