Showing : biomart • reset
0
votes
3
replies
156
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 18 days ago by 65k • written 18 days ago by ▴ 30
2
votes
2
replies
192
views
OrgDb for maize
clusterProfiler OrgDb biomaRt Zea_mays
updated 18 days ago by 65k • written 19 days ago by • 0
0
votes
1
reply
148
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 5 weeks ago by 65k • written 5 weeks ago by • 0
0
votes
1
reply
298
views
error in mapIds function
mapIds biomaRt
updated 10 weeks ago by 690 • written 10 weeks ago by • 0
0
votes
2
replies
465
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
11 weeks ago eefernan5 • 0
1
vote
1
reply
228
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 12 weeks ago by • 0 • written 12 weeks ago by ▴ 10
0
votes
1
reply
225
views
biomaRt issue
biomaRt
updated 12 weeks ago by ★ 6.5k • written 3 months ago by • 0
1
vote
5
replies
440
views
BiomaRt download data error
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
6
votes
9
replies
771
views
biomaRt has encountered an unknown server error.
biomaRt host useEnsembl
updated 3 months ago by • 0 • written 3 months ago by • 0
1
vote
1
reply
417
views
Error with biomaRt
biomaRt
updated 3 months ago by ★ 6.5k • written 3 months ago by • 0
4
votes
2
replies
369
views
Enrichement with clusterProfiler and biomart
biomaRt clusterProfiler Zea_mays
updated 3 months ago by ★ 3.9k • written 3 months ago by • 0
2
votes
2
replies
658
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
3 months ago bd2000 ▴ 30
1
vote
0
replies
213
views
News: Ensembl 111 has been released
Ensembl biomaRt
3 months ago Benjamin ▴ 30
0
votes
2
replies
401
views
Problem with loading ensembl version 105.
biomaRt
4 months ago RC • 0
0
votes
1
reply
717
views
biomaRt_getBM_Failed to collect lazy table
getBM biomaRt
updated 5 months ago by 65k • written 5 months ago by • 0
0
votes
3
replies
393
views
Obtaining rsIDs with ENSG and variant ID information
rsid biomaRt
updated 5 months ago by ★ 3.3k • written 5 months ago by ▴ 30
4
votes
12
replies
977
views
Ensembl down???
biomaRt
5 months ago bas_work ▴ 30
3
votes
2
replies
428
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
5 months ago henrydionne ▴ 10
1
vote
2
replies
671
views
How to find stop codons for a list of genes
stopcodon biomaRt
5 months ago Marek Gierlinski ▴ 30
0
votes
10
replies
819
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R BioMart biomaRt
5 months ago • updated 9 weeks ago ScafioRuo • 0
10
votes
10
replies
7.0k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 6 weeks ago by • 0 • written 6 months ago by ▴ 10
0
votes
3
replies
472
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 6 months ago by 50k • written 6 months ago by • 0
1
vote
4
replies
679
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
7 months ago andrew.b.kleist ▴ 10
0
votes
2
replies
369
views
Biomart - upstream region of 'coding'
biomaRt
updated 7 months ago by ★ 6.5k • written 8 months ago by ▴ 20
0
votes
0
replies
383
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
8 months ago ali.oghabian • 0
3
votes
2
replies
1.1k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 8 months ago by ★ 3.9k • written 8 months ago by ▴ 10
1
vote
5
replies
609
views
Errors with makeTxDbFromBiomart
biomaRt
updated 8 months ago by 65k • written 8 months ago by ▴ 10
1
vote
2
replies
613
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
9 months ago Miguel • 0
0
votes
3
replies
785
views
Error with makeTxDbFromBiomart
DEXSeq biomaRt
updated 8 months ago by 16k • written 9 months ago by • 0
0
votes
1
reply
625
views
Trouble using biomaRt to pull pathway genes from GO
GO biomaRt
updated 9 months ago by 65k • written 9 months ago by • 0
0
votes
1
reply
1.5k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 9 months ago by 42k • written 9 months ago by ▴ 30
2
votes
4
replies
945
views
Use with_go along with other filters in getBM function
Annotation biomaRt
11 months ago RuBBiT0 ▴ 10
1
vote
2
replies
801
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by ★ 6.5k • written 11 months ago by • 0
0
votes
1
reply
833
views
multiple filters in biomaRt
biomaRt
updated 11 months ago by ▴ 10 • written 11 months ago by • 0
0
votes
3
replies
572
views
BioMart Error message when pulling sequences
biomaRt bioma
updated 12 months ago by ★ 6.5k • written 12 months ago by • 0
0
votes
3
replies
1.4k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 12 months ago by ▴ 30
0
votes
1
reply
1.4k
views
biomaRt - NameSpace loading failed
biomaRt bioma
updated 13 months ago by ★ 6.5k • written 13 months ago by • 0
0
votes
3
replies
680
views
BiomaRt: problems annotating a list of DEGs from DESeq2
biomaRt
updated 13 months ago by 42k • written 13 months ago by • 0
0
votes
2
replies
1.1k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 13 months ago by ★ 2.0k • written 13 months ago by • 0
0
votes
3
replies
721
views
How to getting synonymous SNPs from BiomaRt before timing out?
biomaRt SNP
updated 13 months ago by 65k • written 13 months ago by • 0
0
votes
2
replies
780
views
Retrieving true orthologs between species BiomaRt
Orthologs BiomaRt
updated 13 months ago by 65k • written 14 months ago by • 0
0
votes
4
replies
964
views
Write an annotated DESEQ2 counts CSV, pls help.
DESeq2 biomaRt R
14 months ago Dr. • 0
0
votes
0
replies
699
views
BiomaRt - Problem to access homolog lists
biomaRt ensembldb
15 months ago ginie.dub • 0
3
votes
3
replies
1.7k
views
transcript name mapping between human and mouse
biomaRt getLDS
updated 15 months ago by 65k • written 15 months ago by ▴ 20
1
vote
4
replies
726
views
mmc57bl6nj_gene_ensembl biomaRt
biomaRt
16 months ago Maryam • 0
1
vote
3
replies
842
views
Convert Chromosome postion to gene symbol
biomaRt ensembldb
17 months ago mbansal • 0
1
vote
3
replies
780
views
Older source of biocFileCache package
biomaRt
updated 17 months ago by ★ 6.5k • written 17 months ago by • 0
1
vote
3
replies
1.4k
views
Error using biomaRt
biomaRt
updated 18 months ago by ★ 6.5k • written 18 months ago by ▴ 10
0
votes
3
replies
1.0k
views
Problem installing biomaRt on mac
biomaRt mac
updated 8 months ago by ▴ 50 • written 18 months ago by • 0
5
votes
3
replies
1.4k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt ensembldb ensembl
18 months ago • updated 16 months ago jamie.gearing ▴ 60
50 results • Page 1 of 1
Recent ...
Replies
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance by James W. MacDonald 65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
Votes
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
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