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blast
•
reset
0
votes
0
replies
623
views
Visualize blastx output in R
blast
2.7 years ago
kvigil
• 0
1
vote
2
replies
1.8k
views
blastn for selected database and/or organism
blast
blastsequences
updated 7.5 years ago by
James W. MacDonald
68k • written 7.5 years ago by
aush
▴ 40
0
votes
0
replies
1.3k
views
batch blast matrix of protein sequences from R
R
blast
blastsequences
protein
7.8 years ago
andres.susrud
• 0
1
vote
2
replies
2.7k
views
blastSequences queries failing due to BLAST switch to https?
annotate
blastSequences
BLAST
https
updated 9.1 years ago by
Martin Morgan
25k • written 9.1 years ago by
ariel.hecht
• 0
3
votes
8
replies
9.9k
views
Which package to run blast
blast
updated 9.2 years ago by
Malcolm Cook
★ 1.6k • written 9.2 years ago by
biomiha
▴ 20
0
votes
0
replies
1.1k
views
After mapping one Sanger sequence read (about 900bp) to hg19 using blastn, How can I get variants presented as reference-based position and base ch…
Biostrings
blast
variantannotation
9.2 years ago
li lilingdu
▴ 450
0
votes
1
reply
2.1k
views
Primer-blast with bioconductor packages
primer
blast
updated 9.4 years ago by
Hervé Pagès
16k • written 9.5 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
5
replies
7.2k
views
Blastp - through R
blast
R
9.7 years ago
maahpishanu
• 0
4
votes
13
replies
5.9k
views
How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"
annotation
blast
biostrings
updated 10.3 years ago by
Martin Morgan
25k • written 10.3 years ago by
Mathilde
• 0
2
votes
2
replies
2.3k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
11.0 years ago
b.stielow
• 0
4
votes
3
replies
5.6k
views
Use R/Bioconductor to match BLAST hits to GO terms?
GO
BLAST
annotation
updated 11.0 years ago by
Marc Carlson
★ 7.2k • written 11.1 years ago by
Jon Bråte
▴ 270
11 results • Page
1 of 1
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Replies
Answer: Using DESeq2 for age prediction
by
ATpoint
★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis
by
piffelpaff
▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis
by
Michael Love
43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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