Bioconductor Blast

Showing : blast • reset

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blast

16 months ago kvigil • 0

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1.4k

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blast blastsequences

updated 6.1 years ago by James W. MacDonald 66k • written 6.1 years ago by aush ▴ 40

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948

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R blast blastsequences protein

6.4 years ago andres.susrud • 0

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annotate blastSequences BLAST https

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by ariel.hecht • 0

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8.4k

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blast

updated 7.8 years ago by Malcolm Cook ★ 1.6k • written 7.8 years ago by biomiha ▴ 20

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862

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Biostrings blast variantannotation

7.8 years ago li lilingdu ▴ 450

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1.5k

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primer blast

updated 8.1 years ago by Hervé Pagès 16k • written 8.1 years ago by Vinicius Henrique da Silva ▴ 40

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blast R

8.4 years ago maahpishanu • 0

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4.5k

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annotation blast biostrings

updated 8.9 years ago by Martin Morgan 25k • written 8.9 years ago by Mathilde • 0

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1.9k

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blast annotate biostrings export fasta

9.6 years ago b.stielow • 0

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4.9k

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GO BLAST annotation

updated 9.7 years ago by Marc Carlson ★ 7.2k • written 9.7 years ago by Jon Bråte ▴ 250

11 results • Page 1 of 1

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Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k

You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.

Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0

In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…

Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k

For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…

Votes

Comment: Most enriched pathway is not expressed when modifying universe parameter

Time-course, comparison of two groups

Answer: Behaviour of featureCounts when quantifying multi-mapping reads

Answer: GESA with certain gene list returns no result with human genom, but many result

Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`

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