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blast
•
reset
0
votes
0
replies
523
views
Visualize blastx output in R
blast
2.0 years ago
kvigil
• 0
1
vote
2
replies
1.6k
views
blastn for selected database and/or organism
blast
blastsequences
updated 6.8 years ago by
James W. MacDonald
68k • written 6.8 years ago by
aush
▴ 40
0
votes
0
replies
1.1k
views
batch blast matrix of protein sequences from R
R
blast
blastsequences
protein
7.1 years ago
andres.susrud
• 0
1
vote
2
replies
2.4k
views
blastSequences queries failing due to BLAST switch to https?
annotate
blastSequences
BLAST
https
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
ariel.hecht
• 0
3
votes
8
replies
9.2k
views
Which package to run blast
blast
updated 8.5 years ago by
Malcolm Cook
★ 1.6k • written 8.5 years ago by
biomiha
▴ 20
0
votes
0
replies
994
views
After mapping one Sanger sequence read (about 900bp) to hg19 using blastn, How can I get variants presented as reference-based position and base ch…
Biostrings
blast
variantannotation
8.5 years ago
li lilingdu
▴ 450
0
votes
1
reply
1.8k
views
Primer-blast with bioconductor packages
primer
blast
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
5
replies
6.4k
views
Blastp - through R
blast
R
9.0 years ago
maahpishanu
• 0
4
votes
13
replies
5.2k
views
How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"
annotation
blast
biostrings
updated 9.6 years ago by
Martin Morgan
25k • written 9.6 years ago by
Mathilde
• 0
2
votes
2
replies
2.1k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
10.3 years ago
b.stielow
• 0
4
votes
3
replies
5.3k
views
Use R/Bioconductor to match BLAST hits to GO terms?
GO
BLAST
annotation
updated 10.4 years ago by
Marc Carlson
★ 7.2k • written 10.4 years ago by
Jon Bråte
▴ 260
11 results • Page
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Comment: How to formulate 2 factor nested design in DESeq2
by
Mariane
• 0
Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
by
Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Votes
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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