Bioconductor Differential exon usage

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2.7k

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edger normalization differential exon usage splicing

updated 4.1 years ago by Yunshun Chen ▴ 870 • written 4.1 years ago by oakhamwolf • 0

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1.6k

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DEXSeq differential exon usage

updated 6.4 years ago by Alejandro Reyes ★ 1.9k • written 6.4 years ago by A ▴ 40

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differential exon usage exon array analysis annotation hta2.0 diffsplice

updated 7.2 years ago by James W. MacDonald 67k • written 7.2 years ago by relathman ▴ 20

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egdeR multiple time points model.matrix differential exon usage model

7.3 years ago heikki.sarin ▴ 10

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1.8k

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dexseq differential exon usage

updated 7.7 years ago by mat.lesche ▴ 110 • written 7.7 years ago by Assa Yeroslaviz ★ 1.5k

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3.2k

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dexseq differential exon usage

7.8 years ago fizer ▴ 40

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3.6k

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deseq2 dexseq rnaseq differential gene expression differential exon usage

updated 7.9 years ago by Michael Love 42k • written 7.9 years ago by fizer ▴ 40

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890

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dexseq deseq2 differential exon usage

8.1 years ago ste.depo ▴ 10

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1.9k

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dexseq rsem differential exon usage differential gene expression

updated 8.4 years ago by James W. MacDonald 67k • written 8.4 years ago by Assa Yeroslaviz ★ 1.5k

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1.4k

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DEXSeq timecourse rna-seq differential exon usage

updated 8.7 years ago by Alejandro Reyes ★ 1.9k • written 8.8 years ago by MedwayC • 0

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1.7k

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DEXSeq differential exon usage exon usage

updated 9.0 years ago by Alejandro Reyes ★ 1.9k • written 9.0 years ago by biominer ▴ 10

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dexseq rnaseq differential exon usage

9.3 years ago arom2 • 0

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3.6k

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dexseq bitseq cuffdiff Differential exon usage isoforms

9.5 years ago • updated 9.4 years ago elle ▴ 10

13 results • Page 1 of 1

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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

Comment: makeContrastsDream for Interaction by abadgerw • 0

@gabrielhoffman any insight?

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k

That is the rows that did converge.

Answer: Is my time course analysis with DESeq2 valid? by Michael Love 42k

For choosing the correct statistical design, I recommend working with a local statistician or someone familiar with linear models in R. I h…

Votes

A: Some questions for remove batch effect by using mnnCorrect

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

Awards • All

Popular Question to Michael Stadler ▴ 350

Scholar to ATpoint ★ 4.5k

Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20