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egsea
•
reset
3
votes
5
replies
834
views
Help with running egsea()
EGSEA
10 months ago
Chris
▴ 20
0
votes
1
reply
533
views
EGSEA with Affymetrix data
EGSEA
updated 16 months ago by
James W. MacDonald
68k • written 16 months ago by
cverschoor
• 0
0
votes
1
reply
679
views
Is it possible to use pre-ranked list in EGSEA?
EGSEA
EGSEAdata
EGSEA123
DifferentialExpression
updated 19 months ago by
James W. MacDonald
68k • written 19 months ago by
Tiago
• 0
0
votes
1
reply
1.1k
views
EGSEA::egsea - Parallelization issue and "Error in array(col.rgb[, i], dim(node.rgb)[3:1]) : negative length vectors are not allowed"
egsea
EGSEA123
23 months ago
neilzhao
▴ 30
0
votes
3
replies
2.8k
views
Problem in kegga() and others getting data from KEGG after switch from http to https
limma
KEGGREST
EGSEA
updated 2.8 years ago by
shepherl
4.1k • written 2.8 years ago by
Jenny Drnevich
★ 2.0k
6
votes
6
replies
3.5k
views
EGSEA error during report generation: "only 0's may be mixed with negative subscripts"
EGSEA
updated 4.4 years ago by
Martin
• 0 • written 5.8 years ago by
pgugger
▴ 70
1
vote
0
replies
917
views
EGSEA - clarification of values in the Stats Table
egsea
limma
5.6 years ago
rocanja
▴ 60
0
votes
2
replies
1.6k
views
How an index is built for each gene set collections using buildCustomIdx() indexing function of EGSEA package?
EGSEA
edgeR
biomaRt
limma
RNA-seq
5.6 years ago
fgol
▴ 10
9
votes
7
replies
21k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea
gsva
piano
egsea
updated 15 months ago by
amin8w
▴ 10 • written 7.7 years ago by
sina.nassiri
▴ 130
0
votes
1
reply
2.6k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger
dgelist
NA
egsea
updated 7.1 years ago by
Gordon Smyth
52k • written 7.1 years ago by
belmore
• 0
1
vote
0
replies
1.3k
views
EGSEA install licensed KEGG data
EGSEA
KEGG
EGSEAdata
7.1 years ago
john.thompson
▴ 10
0
votes
0
replies
1.0k
views
Contrast matrix for a continuous covariate - for EGSEA algorithm
design and contrast matrix
egsea
7.2 years ago
Stefano Mangiola
▴ 40
0
votes
5
replies
3.0k
views
EGSEA generateReport() error "no adj nodes"
EGSEA
EGSEA123
updated 7.3 years ago by
Monther Alhamdoosh
▴ 40 • written 7.3 years ago by
Jenny Drnevich
★ 2.0k
1
vote
1
reply
1.4k
views
EGSEA : unable to plot heatmaps.
EGSEA
R bioconductor
7.6 years ago
RV
• 0
0
votes
2
replies
1.8k
views
Ensemble EGSEA (EGSEA): base GSA method failures
egsea
8.0 years ago
irizarnaunk
• 0
2
votes
7
replies
2.2k
views
EGSEA - failing to write report
EGSEA
write
updated 8.1 years ago by
Monther Alhamdoosh
▴ 40 • written 8.1 years ago by
mforde84
▴ 20
2
votes
4
replies
2.0k
views
EGSEA usage with microarray data (with vooma)?
EGSEA
gene set testing
vooma
limma voom
gsea
updated 10 months ago by
Chris
▴ 20 • written 8.2 years ago by
Pekka Kohonen
▴ 190
0
votes
4
replies
2.3k
views
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways
gsea
egsea
gage
updated 8.5 years ago by
Monther Alhamdoosh
▴ 40 • written 8.5 years ago by
yingchen
• 0
18 results • Page
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Comment: Ensembl site unresponsive via biomaRt
by
mdeea123
▴ 10
I am also having issues using BioMart to run code that has worked before. The problem first occurred last week. As I have encountered these…
Comment: Bioconductor unable to update 'curl'
by
kagodwi2
• 0
UPDATE: I was able to get curl to work! It seems that because the new version was literally JUST released, there is something "funky" goin…
Comment: Bioconductor unable to update 'curl'
by
kagodwi2
• 0
Thank you! This seems to narrow down the issue, at least. I successfully installed "curl" into both paths, but received the same issue of…
Comment: Bioconductor unable to update 'curl'
by
shepherl
4.1k
Not sure how to completely clear the issues but it might be useful to see which location curl is in `find.package("curl")` and if necessary…
Comment: Bioconductor unable to update 'curl'
by
kagodwi2
• 0
Thank you for the advice. As requested: ``` [1] "C:/Users/kenda/AppData/Local/R/win-library/4.4" [2] "C:/Program Files/R/R-4.4.3/library" …
Votes
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
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