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egsea
•
reset
3
votes
5
replies
650
views
Help with running egsea()
EGSEA
6 months ago
Chris
▴ 20
0
votes
1
reply
459
views
EGSEA with Affymetrix data
EGSEA
updated 12 months ago by
James W. MacDonald
67k • written 12 months ago by
cverschoor
• 0
0
votes
1
reply
594
views
Is it possible to use pre-ranked list in EGSEA?
EGSEA
EGSEAdata
EGSEA123
DifferentialExpression
updated 14 months ago by
James W. MacDonald
67k • written 14 months ago by
Tiago
• 0
0
votes
1
reply
976
views
EGSEA::egsea - Parallelization issue and "Error in array(col.rgb[, i], dim(node.rgb)[3:1]) : negative length vectors are not allowed"
egsea
EGSEA123
19 months ago
neilzhao
▴ 30
0
votes
3
replies
2.4k
views
Problem in kegga() and others getting data from KEGG after switch from http to https
limma
KEGGREST
EGSEA
updated 2.4 years ago by
shepherl
4.1k • written 2.4 years ago by
Jenny Drnevich
★ 2.0k
6
votes
6
replies
3.2k
views
EGSEA error during report generation: "only 0's may be mixed with negative subscripts"
EGSEA
updated 4.1 years ago by
Martin
• 0 • written 5.4 years ago by
pgugger
▴ 70
1
vote
0
replies
842
views
EGSEA - clarification of values in the Stats Table
egsea
limma
5.2 years ago
rocanja
▴ 60
0
votes
2
replies
1.5k
views
How an index is built for each gene set collections using buildCustomIdx() indexing function of EGSEA package?
EGSEA
edgeR
biomaRt
limma
RNA-seq
5.2 years ago
fgol
▴ 10
9
votes
7
replies
21k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea
gsva
piano
egsea
updated 11 months ago by
amin8w
▴ 10 • written 7.3 years ago by
sina.nassiri
▴ 130
0
votes
1
reply
2.5k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger
dgelist
NA
egsea
updated 6.7 years ago by
Gordon Smyth
51k • written 6.7 years ago by
belmore
• 0
1
vote
0
replies
1.2k
views
EGSEA install licensed KEGG data
EGSEA
KEGG
EGSEAdata
6.8 years ago
john.thompson
▴ 10
0
votes
0
replies
970
views
Contrast matrix for a continuous covariate - for EGSEA algorithm
design and contrast matrix
egsea
6.8 years ago
Stefano Mangiola
▴ 20
0
votes
5
replies
2.9k
views
EGSEA generateReport() error "no adj nodes"
EGSEA
EGSEA123
updated 7.0 years ago by
Monther Alhamdoosh
▴ 40 • written 7.0 years ago by
Jenny Drnevich
★ 2.0k
1
vote
1
reply
1.3k
views
EGSEA : unable to plot heatmaps.
EGSEA
R bioconductor
7.2 years ago
RV
• 0
0
votes
2
replies
1.7k
views
Ensemble EGSEA (EGSEA): base GSA method failures
egsea
7.6 years ago
irizarnaunk
• 0
2
votes
7
replies
2.0k
views
EGSEA - failing to write report
EGSEA
write
updated 7.8 years ago by
Monther Alhamdoosh
▴ 40 • written 7.8 years ago by
mforde84
▴ 20
2
votes
4
replies
1.9k
views
EGSEA usage with microarray data (with vooma)?
EGSEA
gene set testing
vooma
limma voom
gsea
updated 6 months ago by
Chris
▴ 20 • written 7.9 years ago by
Pekka Kohonen
▴ 190
0
votes
4
replies
2.2k
views
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways
gsea
egsea
gage
updated 8.2 years ago by
Monther Alhamdoosh
▴ 40 • written 8.2 years ago by
yingchen
• 0
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Comment: Downloading Metagenomic Data with Higher Taxonomic Units
by
elozanoe
• 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Answer: Unlocking Potential: NURS FPX Strategies and Insights
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efsane_kral2000
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Comment: Is it recommended to analyze different tissues together when using edgeR
by
Gordon Smyth
51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data
by
Melisa Tecik
• 0
Thanks a lot for the help. You saved my day
Votes
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
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Fred Hutch (Recruiting)
▴ 40
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Gordon Smyth
51k
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chase.mateusiak
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James W. MacDonald
67k
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JennyS
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