Showing : geneplotter • reset
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How to plot NGS data?
GO BSgenome geneplotter PROcess BSgenome genomes GO BSgenome geneplotter PROcess genomes
updated 12.3 years ago by 25k • written 12.3 years ago by ▴ 30
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12
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2.0k
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Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 17.5 years ago by ★ 5.5k • written 17.5 years ago by ▴ 460
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10
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1.9k
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Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 17.5 years ago by ▴ 460 • written 17.5 years ago by ▴ 70
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6
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3.4k
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how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 16.7 years ago by ▴ 220 • written 16.7 years ago by ★ 2.2k
6
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5
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14k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 10
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5
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3.2k
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From eSet to AffyBatch Object
geneplotter affy geneplotter affy
updated 15.2 years ago by 25k • written 15.2 years ago by ▴ 120
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5
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1.6k
views
getBioC v1.2.22 & [R] v1.6.2
annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets reposTools affy vsn
updated 21.2 years ago by ★ 3.9k • written 21.2 years ago by ▴ 70
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5
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1.1k
views
Recent changes to Bioconductor packages
SAGE annotate geneplotter graph SAGElyzer Rdbi SAGE annotate geneplotter graph SAGElyzer
21.3 years ago • updated 21.2 years ago madman@jimmy.harvard.edu ▴ 850
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5
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1.7k
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annotate incompatible with RdbiPgSQL !?!
annotate geneplotter Rdbi RdbiPgSQL annotate geneplotter Rdbi RdbiPgSQL
updated 15.1 years ago by 65k • written 15.1 years ago by ▴ 160
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4
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2.2k
views
smoothScatter axis limits
annotate geneplotter annotate geneplotter
updated 17.0 years ago by ★ 1.9k • written 17.0 years ago by ▴ 250
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4
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2.1k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.7 years ago by ▴ 500 • written 16.7 years ago by ★ 1.4k
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4
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1.7k
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[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ★ 6.5k
0
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4
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2.3k
views
Installing beadarray
annotate geneplotter beadarray AnnotationDbi annotate geneplotter beadarray AnnotationDbi
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 270
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3
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1.3k
views
Ringo: Error in preprocess() with R-2.7.0, but not with R-2.5.0
probe annotate geneplotter affy vsn Ringo probe annotate geneplotter affy vsn Ringo
updated 15.9 years ago by ▴ 730 • written 15.9 years ago by ▴ 110
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3
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1.6k
views
beadarray package: problem with bead level data
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.8 years ago by ▴ 40 • written 16.8 years ago by ▴ 270
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3
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1.9k
views
Bioconductor / plotting SNPs, runs of homozygosity
SNP geneplotter SNPchip SNP geneplotter SNPchip
updated 13.9 years ago by 6.7k • written 13.9 years ago by ▴ 40
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3
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1.2k
views
contributing to Bioconductor
GO Clustering geneplotter GO Clustering geneplotter
21.2 years ago Wilkinson, Mark ▴ 60
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3
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1.2k
views
chromosome plot
zebrafish geneplotter zebrafish geneplotter
updated 17.0 years ago by ★ 7.4k • written 17.0 years ago by ▴ 160
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2
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1.1k
views
vsm2
Survival geneplotter affy vsn limma affyio Survival geneplotter affy vsn limma affyio
updated 16.6 years ago by ★ 13k • written 16.6 years ago by ▴ 70
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2
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1.2k
views
AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 30
0
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2
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1.2k
views
Rgraphviz edge attributes can't be changed on Mac
Biobase geneplotter Rgraphviz Biobase geneplotter Rgraphviz
updated 16.6 years ago by ▴ 540 • written 16.6 years ago by ★ 1.6k
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2
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1.3k
views
gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 19.6 years ago by ★ 7.4k • written 19.6 years ago by ▴ 130
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2
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1.7k
views
Installation Problem on OS X
GO geneplotter graph Rgraphviz pamr globaltest GO geneplotter graph Rgraphviz pamr
updated 19.5 years ago by ▴ 680 • written 19.5 years ago by ▴ 10
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2
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890
views
greenred.colors() in geneplotter
geneplotter geneplotter
19.2 years ago michael watson IAH-C ★ 3.4k
0
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2
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1.4k
views
Geneplotter, alongChrom problem
Organism geneplotter Organism geneplotter
updated 19.2 years ago by ★ 13k • written 19.2 years ago by ▴ 540
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2
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1.6k
views
"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 17.1 years ago by 50k • written 17.1 years ago by ▴ 680
0
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1
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1.4k
views
ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.8 years ago by ▴ 320 • written 16.8 years ago by ▴ 410
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1
reply
1.2k
views
beadarray - combing
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.8 years ago by ▴ 320 • written 16.8 years ago by ▴ 270
0
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1
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1.1k
views
Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.7 years ago Matthew Hannah ▴ 940
0
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1
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1.2k
views
beadarray: combining several beadsummary data objects
Biobase geneplotter affy affyio beadarray Biobase geneplotter affy affyio beadarray
updated 16.6 years ago by ▴ 460 • written 16.6 years ago by ▴ 70
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1
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777
views
Help using annotation data without explicitly building data package
Annotation geneplotter Annotation geneplotter
updated 20.6 years ago by 6.7k • written 20.6 years ago by 21k
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1
reply
1.3k
views
Problem reading data with beadarray package
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.6 years ago by ▴ 460 • written 16.6 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Rgraphviz edge attributes can't be changed on Mac
geneplotter Rgraphviz geneplotter Rgraphviz
updated 16.6 years ago by 16k • written 16.6 years ago by ★ 1.6k
0
votes
1
reply
1.1k
views
Problems accessing the Milan package through the vignettes Explorer
Cancer Biobase annotate edd geneplotter multtest tkWidgets affydata vsn graph hexbin
updated 20.9 years ago by ★ 2.9k • written 20.9 years ago by ▴ 130
0
votes
1
reply
974
views
Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ★ 1.3k
0
votes
1
reply
829
views
Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ★ 1.3k
0
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1
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1.3k
views
bug info
Microarray Normalization geneplotter graph limma Microarray Normalization geneplotter
updated 12.9 years ago by 6.7k • written 12.9 years ago by ▴ 10
0
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1
reply
1.1k
views
geneplotter - buildChromLoc for arrays with no .db package
GO geneplotter GO geneplotter
updated 11.4 years ago by ★ 7.2k • written 11.5 years ago by ▴ 480
0
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1
reply
1.4k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 17.2 years ago by 65k • written 17.2 years ago by ★ 2.2k
0
votes
1
reply
1.8k
views
install geneplotter
geneplotter geneplotter
updated 10.4 years ago by 65k • written 10.4 years ago by ★ 13k
0
votes
1
reply
947
views
Defining your own chromosome annotations
geneplotter genomes geneplotter genomes
updated 19.1 years ago by 21k • written 19.1 years ago by ▴ 30
0
votes
1
reply
1.3k
views
Error installing geneplotter
geneplotter geneplotter
updated 12.5 years ago by ★ 8.2k • written 12.5 years ago by ★ 13k
0
votes
1
reply
819
views
using geneplotter with my own data
geneplotter geneplotter
updated 21.0 years ago by ★ 3.9k • written 21.0 years ago by ▴ 80
0
votes
1
reply
877
views
[bioC] GenePlotter for mgu74v2
GO Cancer mgu74a mgu74av2 geneplotter GO Cancer mgu74a mgu74av2 geneplotter
updated 21.1 years ago by ★ 5.5k • written 21.1 years ago by ★ 2.9k
0
votes
1
reply
869
views
Plotting together data from hgu133a and b
hgu133a hgu133b geneplotter hgu133a hgu133b geneplotter
updated 19.8 years ago by ★ 5.5k • written 19.8 years ago by ▴ 500
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1
reply
1.2k
views
beadarray readIllumina suggestions
Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy
updated 16.9 years ago by ▴ 460 • written 16.9 years ago by ▴ 10
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1
reply
1.3k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
16.9 years ago Steven McKinney ▴ 310
0
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1
reply
1.6k
views
Problems with url/download and http_proxy
Biobase annotate edd geneplotter tkWidgets ASSIGN Biobase annotate edd geneplotter
updated 21.9 years ago by ▴ 50 • written 21.9 years ago by ▴ 460
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0
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909
views
Re: Bioconductor digest, Vol 1 #41 - 4 msgs
geneplotter multtest geneplotter multtest
22.0 years ago HYing ▴ 20
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0
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834
views
Affy: chromosomal localization with expression value for of gene lists
Cancer geneplotter Cancer geneplotter
19.3 years ago John Zhang ★ 2.9k
50 results • Page 1 of 1
Recent ...
Replies
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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