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genes
•
reset
0
votes
2
replies
500
views
Deseq2 design
DESeq2
genes
Differential
expressed
12 months ago • updated 11 months ago
Syed Zaheer
▴ 10
0
votes
1
reply
879
views
enrichment to common gene
GeneSetEnrichment
genes
genetogo
updated 23 months ago by
Basti
▴ 780 • written 23 months ago by
Noy
• 0
0
votes
1
reply
607
views
find genes near a microRNA binding site
R
microRNA
genes
binding Site
4.8 years ago
pengu447
• 0
2
votes
4
replies
1.3k
views
Majority upregulated genes in edgeR
edger
differential expression
genes
fold change
updated 4.9 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
ilovesuperheroes1993
• 0
1
vote
2
replies
705
views
Two factors design with DESEq2
deseq2
genes
expression
updated 5.1 years ago by
Michael Love
41k • written 5.1 years ago by
UserAnonyme
• 0
1
vote
1
reply
1.1k
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO
significant
enrichment
genes
IDs
5.3 years ago
David ROUX
▴ 20
0
votes
1
reply
916
views
Running DESeq2 on top variable genes?
deseq2
variance
genes
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
hs.lansdell
▴ 20
2
votes
2
replies
1.1k
views
list fo genes by cnv
cnv
genes
genomic ranges
splitByOverlap
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
julrodr80
▴ 30
0
votes
1
reply
701
views
No differentyally expresses genes
deseq2
genes
updated 7.8 years ago by
Michael Love
41k • written 7.8 years ago by
silviajserrano
• 0
0
votes
3
replies
2.6k
views
Wald vs LRT: different number of significant genes when testing the same coefficient
deseq2
wald
lrt
genes
significance
updated 7.9 years ago by
Michael Love
41k • written 7.9 years ago by
aziza
▴ 20
0
votes
1
reply
2.4k
views
Display subset of rownames in large heatmap?
heatmap
rownames
genes
8.6 years ago
johnlee.johnson
• 0
0
votes
2
replies
1.2k
views
Help needed to identify common genes among datasets
datasets
genes
gene expression
updated 8.7 years ago by
Steve Lianoglou
★ 13k • written 8.7 years ago by
vavecilla
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
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Michael Love
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Malcolm Cook
★ 1.6k
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Gordon Smyth
50k
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priyanka.m
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Vincent J. Carey, Jr.
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