Showing : genes • reset
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Wald vs LRT: different number of significant genes when testing the same coefficient
deseq2 wald lrt genes significance
updated 7.9 years ago by 42k • written 7.9 years ago by ▴ 20
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1
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2.4k
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Display subset of rownames in large heatmap?
heatmap rownames genes
8.6 years ago johnlee.johnson • 0
2
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4
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1.3k
views
Majority upregulated genes in edgeR
edger differential expression genes fold change
updated 4.9 years ago by ★ 28k • written 4.9 years ago by • 0
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2
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1.2k
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Help needed to identify common genes among datasets
datasets genes gene expression
updated 8.7 years ago by ★ 13k • written 8.7 years ago by • 0
1
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1
reply
1.1k
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How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
5.3 years ago David ROUX ▴ 20
2
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2
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1.1k
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list fo genes by cnv
cnv genes genomic ranges splitByOverlap
updated 7.1 years ago by 25k • written 7.1 years ago by ▴ 30
0
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1
reply
917
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Running DESeq2 on top variable genes?
deseq2 variance genes
updated 6.5 years ago by 42k • written 6.5 years ago by ▴ 20
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1
reply
881
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enrichment to common gene
GeneSetEnrichment genes genetogo
updated 23 months ago by ▴ 780 • written 23 months ago by • 0
1
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2
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705
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Two factors design with DESEq2
deseq2 genes expression
updated 5.1 years ago by 42k • written 5.1 years ago by • 0
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1
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701
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No differentyally expresses genes
deseq2 genes
updated 7.8 years ago by 42k • written 7.8 years ago by • 0
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1
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608
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find genes near a microRNA binding site
R microRNA genes binding Site
4.8 years ago pengu447 • 0
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2
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500
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Deseq2 design
DESeq2 genes Differential expressed
12 months ago Syed Zaheer ▴ 10
12 results • Page 1 of 1
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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results by ATpoint ★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
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