Showing : goseq • reset
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RNA seq analysis of Arabidopsis genome
GO Category goseq GO Category goseq
updated 14.4 years ago by ▴ 50 • written 14.5 years ago by ▴ 10
4
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5
replies
2.7k
views
Downgrading R to 3.6.0 version (GOseq problem)
goseq installation
6.2 years ago gdalsky ▴ 40
0
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0
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2.7k
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How to use REVIGO to remove redundant GO term
goseq revigo
10.5 years ago jackipchiho ▴ 10
3
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3
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2.6k
views
Goseq and yeast
goseq yeast
11.0 years ago Marek Gierlinski ▴ 30
0
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0
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2.6k
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GOSeq with unsupported organism (Arabidopsis) and retrieving gene IDs from enriched GO categories
GO Organism PROcess goseq GO Organism PROcess goseq
12.0 years ago Dale Richardson ▴ 30
1
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3
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2.6k
views
goseq: Formatting category list for use with goseq
goseq category test
updated 7.4 years ago by 68k • written 7.4 years ago by ▴ 40
2
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2
replies
2.5k
views
Goseq supported organism (felcat5) has an error when testing
goseq genesetenrichment annotation
updated 10.5 years ago by ▴ 320 • written 10.5 years ago by ▴ 20
0
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2
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2.5k
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Goseq plot
biomaRt goseq biomaRt goseq
updated 14.0 years ago by ▴ 100 • written 14.0 years ago by ▴ 220
0
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1
reply
2.5k
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Can I know the number of genes in enriched GO category using GOseq
GO annotate Category goseq GO annotate Category goseq
updated 15.0 years ago by ▴ 40 • written 15.0 years ago by ▴ 150
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1
reply
2.5k
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GO.db won't install for using goseq package
GO.db goseq package installation error
updated 8.5 years ago by 25k • written 8.5 years ago by • 0
8
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10
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2.5k
views
Genes listed in GO categories
goseq biomart
updated 7.7 years ago by 53k • written 7.7 years ago by • 0
0
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0
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2.4k
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Visualising the GO structure (RNA-seq) using topGO, and goseq
Microarray GO Visualization graph topGO goseq Microarray GO Visualization graph topGO
14.9 years ago Paolo Sonego ▴ 140
2
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3
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2.4k
views
GOseq error on running nullp
goseq GO term
updated 8.4 years ago by 53k • written 8.4 years ago by • 0
3
votes
4
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2.4k
views
Trying to account for gene length in topGO analysis
topgo goseq deseq2
updated 9.7 years ago by ▴ 610 • written 9.7 years ago by • 0
1
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4
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2.4k
views
GOSeq: analysis of unsupported genome after HTseq and DEseq2 - building gene lengths, comparing contrasts and understanding results.
deseq2 goseq htseqcounts rnaseq plant
updated 9.7 years ago by 53k • written 9.7 years ago by • 0
3
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5
replies
2.4k
views
Does DEseq2 analysis make GOseq redundant?
deseq2 goseq gene ontology differential gene expression
8.6 years ago david.rinker ▴ 10
0
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6
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2.4k
views
How to link methylation code from UCSC (hg19-cg07790169) to ENSEMBL genome code (goseq procedure)
goseq methylation ensembl ucsc limma
8.0 years ago dusan.petrovic • 0
1
vote
4
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2.3k
views
goseq package loading issues
DESeq2 goseq
5.0 years ago avinashi • 0
1
vote
6
replies
2.3k
views
goseq Error: could not find function "supportedOrganisms"
goseq
updated 8.9 years ago by • 0 • written 9.0 years ago by ▴ 30
0
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1
reply
2.3k
views
PANTHER.db- external pointer error
goseq pantherdb pathway analysis gene ontology
updated 8.2 years ago by 68k • written 8.2 years ago by ▴ 10
0
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4
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2.3k
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danRer10 is missing in geneLenDataBase
genelendatabase goseq
updated 10.0 years ago by ▴ 320 • written 10.0 years ago by • 0
0
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0
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2.2k
views
GO with R and Bioconductor
Transcription Annotation GO GOstats biomaRt topGO GSEABase goseq Transcription Annotation
15.0 years ago Duke ▴ 210
0
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2
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2.2k
views
GOseq: Correct for gene length or read count?
goseq dexseq
8.5 years ago i.sudbery ▴ 40
2
votes
6
replies
2.2k
views
Print to txt file in specific way
goseq sink cat print
updated 10.1 years ago by ★ 6.6k • written 10.1 years ago by ▴ 370
0
votes
1
reply
2.1k
views
GOseq at a specific level ?
GO goseq GO goseq
updated 11.9 years ago by ▴ 320 • written 12.0 years ago by ▴ 80
0
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1
reply
2.1k
views
goseq and transcript length data
Annotation GO PROcess goseq Annotation GO PROcess goseq
updated 12.7 years ago by ▴ 320 • written 12.7 years ago by ★ 13k
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1
reply
2.1k
views
makeTranscriptDbFromGFF fails on NCBI Bacteria genomes
GO TranscriptDb goseq genomes GO TranscriptDb goseq genomes
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ▴ 80
0
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0
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2.1k
views
SPIA algorithm organisms not included already in the SPIA package
Organism SPIA goseq KEGGREST Organism SPIA goseq KEGGREST
13.0 years ago Tarca, Adi ▴ 570
0
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2
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2.1k
views
bias.data vector must have the same length as DEgenes vector!
edger goseq
updated 8.5 years ago by ★ 29k • written 8.5 years ago by ▴ 10
0
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0
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2.1k
views
GOseq tutorial for not supported organisms: am I doing it correctly?
deseq2 goseq biomart r rnaseq
9.8 years ago CandiceChuDVM ▴ 40
3
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1
reply
2.1k
views
goseq pwf length bias plot: interpreting plot
goseq
updated 9.6 years ago by 53k • written 9.6 years ago by ▴ 130
0
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1
reply
2.0k
views
GOseq with ce6
GO Yeast Organism goseq genomes GO Yeast Organism goseq genomes
updated 11.9 years ago by ▴ 320 • written 11.9 years ago by ▴ 50
0
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3
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2.0k
views
goseq after edgeR
edger goseq
updated 8.5 years ago by ★ 29k • written 8.5 years ago by ▴ 10
2
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2
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2.0k
views
goseq ERROR: SupportedOrganisms() subscript out of bounds
goseq
9.0 years ago jesykamelendez ▴ 20
0
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1
reply
2.0k
views
goseq: probability weighting function returns NA for bias and weighting info. for some genes (mm10); why?
goseq pwf
updated 10.5 years ago by ▴ 320 • written 10.5 years ago by • 0
0
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2
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2.0k
views
Extract all data from goseq (gene list with goterms)
r goseq go
updated 9.6 years ago by ▴ 320 • written 9.6 years ago by • 0
0
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1
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2.0k
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help: goseq and makeOrgPackageFromNCBI in AnnotationForge
RNASeq GO Organism AnnotationDbi goseq RNASeq GO Organism AnnotationDbi goseq
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ▴ 80
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5
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2.0k
views
goseq - supportedOrganisms error
go goseq
updated 9.0 years ago by 53k • written 9.0 years ago by • 0
2
votes
2
replies
1.9k
views
Error in normSplitFactor(f, x)
GenomicRanges rtracklayer goseq
updated 8.5 years ago by ★ 11k • written 8.5 years ago by ▴ 10
1
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1
reply
1.9k
views
Goseq output with too many GO terms per category
go goseq goterm category
updated 7.5 years ago by 53k • written 7.5 years ago by • 0
1
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3
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1.9k
views
How to resolve length bias and get GO/KEGG pathway for "non-standard" species in limma or goseq ?
rna-seq limma goseq
updated 9.8 years ago by ▴ 320 • written 9.8 years ago by ▴ 40
0
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1
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1.9k
views
GOseq for enrichment of clustering results
GO Clustering goseq GO Clustering goseq
updated 13.9 years ago by ▴ 100 • written 13.9 years ago by ▴ 110
0
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0
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1.9k
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I finally solved my problem with installing "org.Hs.eg.db"!
goseq org.hs.eg.db
7.9 years ago nancyjwahl7 • 0
0
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1
reply
1.8k
views
geneLenDataBase installation issues
GO rtracklayer goseq BiocInstaller GO rtracklayer goseq BiocInstaller
updated 13.9 years ago by 25k • written 13.9 years ago by ▴ 50
0
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6
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1.8k
views
Making use of the Apis mellifera assembly 2 data in goSeq
GO Organism Apis mellifera goseq GO Organism Apis mellifera goseq
updated 14.0 years ago by 16k • written 14.0 years ago by ▴ 30
2
votes
6
replies
1.8k
views
Can't install GOSEQ (dependency problem) on CentOS 7!
goseq r package r
updated 6.4 years ago by ★ 6.6k • written 6.4 years ago by ▴ 60
0
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1
reply
1.8k
views
Goseq with small numbers of genes: minimum number?
goseq
10.5 years ago matt.arno • 0
0
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3
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1.8k
views
What is the impact of using GOSeq to voom-adjusted RNA-seq Expressions ?
limma limma-voom goseq
updated 8.1 years ago by 53k • written 8.1 years ago by • 0
1
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2
replies
1.8k
views
Goseq problem with "missing value"
goseq
updated 11.0 years ago by ▴ 320 • written 11.0 years ago by ▴ 30
2
votes
3
replies
1.8k
views
Can we use Entrez IDs for GOSeq?
goseq entrez gene identifiers
updated 9.8 years ago by 68k • written 9.8 years ago by • 0
162 results • Page 2 of 4
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Replies
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by strawberry3 • 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by James W. MacDonald 68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Votes
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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