Bioconductor Help

Showing : help • reset

votes

330

views

bachelorthesis help HELP

updated 8 months ago by DrFizz • 0 • written 9 months ago by melander • 0

votes

replies

1.4k

views

DESeq2 HELP

14 months ago Michael • 0

votes

replies

1.2k

views

DESeq2 volcanoplot deseq HELP contrast

updated 14 months ago by Basti ▴ 780 • written 14 months ago by Michael • 0

votes

replies

719

views

ChIPpeakAnno Normalization EnrichedHeatmap HELP TxDb.Celegans.UCSC.ce11.refGene

18 months ago michela ▴ 20

votes

replies

1.2k

views

HELP HelloRanges

updated 18 months ago by James W. MacDonald 65k • written 18 months ago by michela ▴ 20

votes

replies

1.6k

views

HELP ChIC.data PeakDetection ChipOnChipData

19 months ago • updated 18 months ago michela ▴ 20

votes

570

views

HELP Data

updated 20 months ago by Guido Hooiveld ★ 3.9k • written 20 months ago by mcclurejenniferc • 0

votes

replies

1.7k

views

STRINGdb HELP

updated 14 months ago by Rodrigo ▴ 10 • written 2.2 years ago by Jessica ▴ 10

vote

replies

2.4k

views

HELP ChIPpeakAnno

2.5 years ago lexi.kellington • 0

vote

replies

4.2k

views

help DESeq2 DESeqDataSetFromMatrix rownames

updated 23 months ago by Sanatan • 0 • written 3.0 years ago by dorina.jamniczky • 0

votes

replies

1.4k

views

RNASeqData RNASeq GEO RNASeqR HELP

3.1 years ago hgalmoore • 0

votes

2.0k

views

help software error

updated 5.3 years ago by Martin Morgan 25k • written 5.3 years ago by mafusa20 • 0

votes

replies

1.0k

views

limma time series help

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by rm1238 • 0

vote

replies

6.0k

views

clusterprofiler input files error help

updated 7.2 years ago by Guangchuang Yu ★ 1.2k • written 7.2 years ago by Mataivic • 0

votes

replies

2.5k

views

edger differential gene expression without replicate nested design help

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by knipehf • 0

votes

replies

1.8k

views

R deseq2 differential gene expression help

7.9 years ago • updated 7.8 years ago fischer87 • 0

votes

replies

1.4k

views

limma help

updated 8.4 years ago by svlachavas ▴ 830 • written 8.4 years ago by libya.tahani • 0

17 results • Page 1 of 1

Recent ...

Replies

Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k

I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …

Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…

Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0

Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k

Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…

Comment: Store output of matchPWM() by James W. MacDonald 65k

Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…

Votes

Answer: DEseq2 coefficient

SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Awards • All

Scholar to Rory Stark ★ 5.2k

Popular Question to tangming2005 ▴ 190