Showing : hic • reset
0
votes
2
replies
299
views
Java error while running HiCDC overview code
JuicerTools HiC HiCDCPlus Java Juicer
written 5 months ago by • 0
0
votes
0
replies
808
views
Job: Bioinformatics Research Scientist- Epigenetics Group
HiC Epigenetics HiCHIP ChIPSeq
23 months ago xubeisi • 0
0
votes
0
replies
821
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER HiCUP BAM HiC
2.5 years ago Ankit ▴ 20
0
votes
3
replies
844
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus HiC-DC+ HiCcompare HiC
updated 2.0 years ago by • 0 • written 3.5 years ago by • 0
0
votes
0
replies
553
views
Looking for a package to efficiently plot Hi-C contact maps
HiC hicrep HiCcompare
3.5 years ago changxu.fan ▴ 20
1
vote
7
replies
1.6k
views
problem recasting InteractionSet into a DGEList
diffHic GenomicInteractions edgeR HiC cooler
updated 3.7 years ago by ★ 28k • written 3.7 years ago by ▴ 30
0
votes
1
reply
843
views
How to load counts from existing count matrices in diffHic package
diffHic HiC InteractionSet
updated 4.0 years ago by ★ 28k • written 4.0 years ago by • 0
0
votes
1
reply
861
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare HiC cool
updated 4.6 years ago by ★ 3.9k • written 4.6 years ago by • 0
0
votes
3
replies
1.5k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 5.3 years ago by • 0 • written 5.3 years ago by • 0
0
votes
9
replies
1.5k
views
from denove contig assembly to chromosome bins
diffhic gothic hicup hic-c hic
updated 5.4 years ago by ★ 28k • written 5.4 years ago by ▴ 10
0
votes
1
reply
910
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic diffhic gothic hicup hic-c
5.4 years ago mictadlo ▴ 10
1
vote
1
reply
1.4k
views
extract HiC contacts for a given BEDPE set of coordinates
hic diffhic chromatin bedpe
updated 5.7 years ago by ★ 28k • written 5.7 years ago by • 0
2
votes
1
reply
1.2k
views
Inflating interactionSets into a contact matrix
diffhic hic interactionset contactmatrix inflate
updated 6.5 years ago by ★ 28k • written 6.5 years ago by ▴ 20
0
votes
8
replies
1.6k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic hic
updated 6.5 years ago by ★ 28k • written 6.5 years ago by ▴ 20
2
votes
2
replies
1.4k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic hicpro hic
6.8 years ago sergio.espeso-gil • 0
0
votes
3
replies
1.6k
views
GOTHiC hg19 error
GOTHiC hic
8.6 years ago Nathan Sheffield ▴ 10
4
votes
20
replies
2.5k
views
scaling loess curves
HiTC gothic diffhic HiC
8.7 years ago Bogdan ▴ 670
17 results • Page 1 of 1
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Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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