Bioconductor Hta2.0

Showing : hta2.0 • reset

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1.3k

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HTA2.0 microarray affy r

4.2 years ago Marco_aurelio • 0

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1.4k

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affy rna hta2.0 r

updated 4.5 years ago by James W. MacDonald 67k • written 4.5 years ago by Marco_aurelio • 0

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1.6k

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oligo HTA2.0 affycoretools RMA fitProbeLevelModel

updated 5.4 years ago by James W. MacDonald 67k • written 5.4 years ago by Guido Hooiveld ★ 4.1k

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1.3k

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microarray hta2.0 arrayqualitymetrics

updated 5.9 years ago by Mike Smith ★ 6.6k • written 6.0 years ago by RV ▴ 10

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2.3k

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hta2.0 annotation transcripts

updated 6.2 years ago by svlachavas ▴ 830 • written 6.2 years ago by Biomed • 0

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2.1k

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microarray scan.upc hta2.0

updated 6.9 years ago by Stephen Piccolo ▴ 600 • written 6.9 years ago by Lukas__ • 0

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1.6k

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differential exon usage exon array analysis annotation hta2.0 diffsplice

updated 7.2 years ago by James W. MacDonald 67k • written 7.2 years ago by relathman ▴ 20

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1.6k

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pd.hta.2.0 hta2.0 affycoretools

updated 7.2 years ago by James W. MacDonald 67k • written 7.2 years ago by relathman ▴ 20

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3.1k

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hta2.0 transcripts

7.2 years ago giroudpaul ▴ 40

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1.2k

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affxparser cdf hta2.0

7.4 years ago relathman ▴ 20

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1.4k

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hta2.0 limma batch effect affymetrix microarrays ComBat

7.6 years ago • updated 7.5 years ago svlachavas ▴ 830

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1.7k

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oligo hta2.0 affymetrix microarrays memory problem

updated 7.6 years ago by James W. MacDonald 67k • written 7.6 years ago by svlachavas ▴ 830

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3.6k

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oligo affycoretools hta2.0 affymetrix

updated 2.5 years ago by Yang Shi ▴ 10 • written 7.6 years ago by svlachavas ▴ 830

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1.0k

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affyPLM fitPLM hta2.0

8.2 years ago Guido Hooiveld ★ 4.1k

14 results • Page 1 of 1

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Comment: [How to construct a model.matrix ] by kyj2226 • 0

Thanks to you, I learn a lot. Many thanks, Yujin.

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

thank you for your advice, I posted separate post.

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k

Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…

Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k

DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…

Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Votes

Answer: [How to construct a model.matrix ]

C: DESeq2 baseMean values for each sample

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta

A: Some questions for remove batch effect by using mnnCorrect

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