Showing : infrastructure • reset
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10
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assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
11.1 years ago Julie Zhu ★ 4.3k
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8
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1.9k
views
good news and bad news
Infrastructure Cancer IRanges GenomicRanges Infrastructure Cancer IRanges GenomicRanges
updated 11.7 years ago by ★ 13k • written 11.7 years ago by 16k
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7
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2.2k
views
Bioconductor 2.6 is released
Sequencing Microarray Visualization Infrastructure PROcess beadarray keggorthology eisa
updated 7.7 years ago by • 0 • written 14.0 years ago by ★ 1.6k
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5
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3.3k
views
Running the GSEA algorithm
Infrastructure PGSEA GSEABase SeqGSEA Infrastructure PGSEA GSEABase SeqGSEA
updated 10.1 years ago by ★ 1.3k • written 10.1 years ago by ▴ 660
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5
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1.7k
views
extracting interactions between members of the KEGG pathways
Pathways Infrastructure Cancer graph Pathways Infrastructure Cancer graph
updated 18.1 years ago by ★ 5.5k • written 18.1 years ago by ▴ 90
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5
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1.3k
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A code kata: evening-out *Ranges ends.
Infrastructure Cancer IRanges Infrastructure Cancer IRanges
13.7 years ago Steve Lianoglou ★ 13k
0
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5
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4.6k
views
Finding mismatches between reads and reference sequence
Infrastructure Cancer BSgenome BSgenome Infrastructure Cancer BSgenome BSgenome
updated 11.1 years ago by ▴ 30 • written 11.1 years ago by 16k
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5
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1.1k
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pooling for parallel hierarchical operations
Infrastructure Infrastructure
updated 11.5 years ago by 25k • written 11.5 years ago by ★ 11k
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4
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1.8k
views
DexSeq extracols option
RNASeq Microarray Genetics Annotation Normalization Infrastructure Cancer probe limma
updated 10.8 years ago by ★ 1.9k • written 10.8 years ago by ▴ 40
1
vote
4
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4.7k
views
Affymetrix Human Gene 1.0 ST Array
Infrastructure cdf probe affy Infrastructure cdf probe affy
16.0 years ago Hans-Ulrich Klein ▴ 330
1
vote
3
replies
2.6k
views
deseq2 DESeqDataSet size when saved
deseq2 infrastructure deseqdataset importing
updated 5.6 years ago by 41k • written 5.6 years ago by • 0
0
votes
2
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970
views
"internal equal" overlap mode for GRangesList
Infrastructure Infrastructure
updated 12.5 years ago by ★ 1.6k • written 12.5 years ago by ★ 11k
0
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2
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2.5k
views
counting RNA-seq reads in R/BioC
GO Infrastructure Rsubread easyRNASeq GO Infrastructure Rsubread easyRNASeq
updated 11.6 years ago by ★ 6.8k • written 11.6 years ago by ▴ 880
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2
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1.0k
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*Ranges paper published
Infrastructure IRanges GenomicFeatures GenomicRanges Infrastructure IRanges GenomicFeatures
updated 10.7 years ago by ★ 4.2k • written 10.7 years ago by ★ 11k
0
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2
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1.6k
views
GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 11.2 years ago by 25k • written 11.2 years ago by ▴ 80
0
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2
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2.6k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 11.1 years ago by 25k • written 11.1 years ago by ▴ 40
0
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2
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1.5k
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GGtools and GGBase installation problems
Infrastructure GUI Ruuid GGtools GGBase Infrastructure GUI Ruuid GGtools GGBase
updated 13.2 years ago by 6.7k • written 13.2 years ago by ▴ 460
0
votes
1
reply
965
views
convert IDs in a data frame?
GO Infrastructure Cancer GO Infrastructure Cancer
updated 10.8 years ago by ★ 7.2k • written 10.8 years ago by 16k
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1
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1.3k
views
BioC 2.2 now available
SNP Microarray Genetics Annotation Preprocessing Bayesian Clustering Infrastructure Cancer
updated 16.0 years ago by ★ 1.6k • written 16.0 years ago by 25k
0
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1
reply
1.1k
views
Newbie 'rflowcyt' question; problem loading facscan256.fcs
Survival Infrastructure Cancer hexbin prada rfcdmin rflowcyt Survival Infrastructure
updated 17.9 years ago by ★ 7.4k • written 17.9 years ago by ▴ 80
0
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1
reply
1.4k
views
GSEABase error in parsing msigdb_v2.5.xml
GO Infrastructure hgu95av2 Biobase Ruuid AnnotationDbi GO Infrastructure hgu95av2 Biobase
updated 16.0 years ago by 25k • written 16.0 years ago by ▴ 130
0
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1
reply
853
views
Project Enquiry!
Infrastructure Infrastructure
15.7 years ago Kat ▴ 20
0
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1
reply
800
views
The bioconductor.org main website will be down for a brief period for maintenance. Starting approximately 7:45 am EST. Should be back up around 8:00 …
infrastructure
7.3 years ago gregory.wargula ▴ 30
4
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1
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2.6k
views
News: Bioconductor git transition BETA phase starts now.
git svn infrastructure bioconductor News
6.8 years ago nitesh.turaga ▴ 140
0
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0
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1.2k
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Bioinformatics Position Opening
Proteomics Infrastructure Proteomics Infrastructure
11.3 years ago Thomas Girke ★ 1.7k
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0
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1.3k
views
Open computational biologist position at Genentech
Infrastructure Infrastructure
11.3 years ago Michael Lawrence ★ 11k
0
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0
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1.3k
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Job: Bioinformatician (postdoc, indefinite) Pirbright Institute
Infrastructure Infrastructure
11.1 years ago Jan T Kim ▴ 50
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0
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1.6k
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Bioconductor Digest, Vol 121, Issue 29
miRNA Annotation Normalization Visualization Clustering Infrastructure Cancer BSgenome vsn
11.1 years ago Matthew Thornton ▴ 350
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0
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1.2k
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Reopening of Computational Biologist position at Genentech
Infrastructure PROcess Infrastructure PROcess
10.7 years ago Michael Lawrence ★ 11k
0
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0
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1.4k
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Bioinformatics Facility Director Position at UC Riverside
Proteomics Infrastructure Proteomics Infrastructure
10.6 years ago Thomas Girke ★ 1.7k
3
votes
0
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1.7k
views
News: BioCAsia, 8 Sept 2015, Tokyo
sequencing transcription epigenomics visualization infrastructure News
8.9 years ago • updated 8.7 years ago Matthew Ritchie ▴ 1000
1
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0
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1.5k
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News: BioCAsia, 4th November 2016, Brisbane, Australia
conference transcription epigenomics visualization infrastructure News
7.8 years ago Matthew Ritchie ▴ 1000
0
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0
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1.3k
views
BioC 1.9 is released!
BiocViews SNP Microarray Annotation Normalization Visualization Network Infrastructure SNP
17.6 years ago Seth Falcon ★ 7.4k
0
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0
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656
views
News: Single Package Builder / New Package Submission
new package build machines infrastructure News
3.9 years ago shepherl 3.8k
0
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0
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1.5k
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Bioinformatics Academic Coordinator Job Posting
Proteomics Infrastructure Proteomics Infrastructure
11.8 years ago Guest User ★ 13k
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0
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1.6k
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Bioinformatician Job at Pirbright Institute
Genetics Infrastructure Genetics Infrastructure
11.4 years ago Jan T Kim ▴ 50
0
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0
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1.9k
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job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics Infrastructure Epigenetics Infrastructure
10.3 years ago Holger Klein ▴ 20
0
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0
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659
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[BioCTrain] announcement: training option Boston May 2003
Preprocessing Infrastructure oligo Preprocessing Infrastructure oligo
21.1 years ago Vincent Carey ▴ 10
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0
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1.2k
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S+ArrayAnalyzer and BioConductor Announcement
Microarray SAGE Annotation Infrastructure Microarray SAGE Annotation Infrastructure
19.9 years ago MOConnell@insightful.com ▴ 20
0
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0
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2.2k
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Prestigious Research Fellowship in Biostatistics/Bioinformatics
Microarray Survival Infrastructure Cancer Breast bridge Microarray Survival Infrastructure
19.9 years ago Wei, Wenbin ▴ 50
0
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0
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631
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100K SNP chips for linkage
SNP Microarray Infrastructure Cancer affy SNP Microarray Infrastructure Cancer affy
18.9 years ago James W. MacDonald 65k
0
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0
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930
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Job: Computational Biology Group at FHCRC is hiring
Infrastructure Cancer PROcess Infrastructure Cancer PROcess
18.7 years ago Seth Falcon ★ 7.4k
0
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0
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878
views
[OT] Biostatistician position available
Microarray Infrastructure Microarray Infrastructure
18.6 years ago Diego Diez ▴ 760
0
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0
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869
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Cel -> MAGE-ML
Infrastructure affy RMAGEML Infrastructure affy RMAGEML
18.4 years ago Steffen Durinck ▴ 420
0
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0
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1.0k
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2x2 factorial with dye effect, limma design
Microarray Infrastructure Microarray Infrastructure
17.3 years ago Gordon Smyth 50k
0
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0
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619
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question regarding lumiHumanV1SUMFUNC and lumiRatV1SUMFUNC in lumiHumanV1 and lumiRatV1, respectively
Annotation Infrastructure Cancer Annotation Infrastructure Cancer
16.7 years ago Seth Falcon ★ 7.4k
0
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0
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1.2k
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biocep project - R for the Web and the Virtual R Workbench
Infrastructure PROcess Infrastructure PROcess
16.4 years ago kchine@ebi.ac.uk ▴ 10
0
votes
0
replies
827
views
To biomaRt users: Major downtime March 7th 4pm - March 8th 6pm
Infrastructure biomaRt Infrastructure biomaRt
16.2 years ago Steffen ▴ 500
0
votes
0
replies
909
views
Staff Position at EBI: Computational Scientist / Bioconductor
Infrastructure Infrastructure
15.7 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
1.3k
views
GSEA to discover co-regulated genes
Transcription Annotation Pathways Infrastructure probe convert GSEABase Transcription
15.2 years ago Paul Geeleher ★ 1.3k
50 results • Page 1 of 1
Recent ...
Replies
Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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