Bioconductor Isoform

Showing : isoform • reset

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1.2k

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isoformswitchanalyzer isoform differential isoform usage

written 5.4 years ago by A ▴ 40

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1.1k

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gene isoform quantification rna-seq

updated 4.7 years ago by swbarnes2 ★ 1.3k • written 4.7 years ago by angel.campos • 0

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1.2k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 4.6 years ago by k.vitting.seerup ▴ 120 • written 4.6 years ago by asmita • 0

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1.3k

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isoform RNA-seq hisat2 stringtie ballgown

3.6 years ago ra711 • 0

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2.2k

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RNASeqData isoform DESeq2

2.0 years ago • updated 23 months ago priyanka.m • 0

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376

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Isoform IsoformSwitchAnalyzeR

11 months ago Craig • 0

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958

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kallisto differential isoform usage isoform

6.5 years ago ilyco • 0

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570

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pacbio isoform

written 17 months ago by lhaiyan3 • 0

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1.1k

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tximport isoform voom

updated 3.8 years ago by Gordon Smyth 50k • written 3.8 years ago by Ina Hoeschele ▴ 620

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1.3k

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isoform deep sequencing voom

updated 3.7 years ago by Gordon Smyth 50k • written 3.7 years ago by Ina Hoeschele ▴ 620

10 results • Page 1 of 1

Recent ...

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 with no issues at all. If you're having trouble with Bioc installa…

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k