Biostar Isoformswitchanalyzer

Showing : isoformswitchanalyzer • reset

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585

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IsoformSwitchAnalyzeR

updated 3.2 years ago by k.vitting.seerup ▴ 100 • written 3.2 years ago by maya.kappil ▴ 20

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565

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isoformswitchanalyzer isoform differential isoform usage

updated 3.5 years ago by k.vitting.seerup ▴ 100 • written 3.5 years ago by A ▴ 40

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IsoformSwitchAnalyzeR

4 weeks ago venura • 0

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1.2k

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isoformswitchanalyzeR tximport rnaseq salmon

updated 3.1 years ago by k.vitting.seerup ▴ 100 • written 3.1 years ago by saddamhusain77 • 0

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507

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 2.6 years ago by k.vitting.seerup ▴ 100 • written 2.6 years ago by asmita • 0

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618

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edgeR DEXSeq IsoformSwitchAnalyzeR DTU

updated 11 months ago by k.vitting.seerup ▴ 100 • written 13 months ago by jbono ▴ 10

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992

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isoformswitchanalyzeR rna-seq splice-variants

updated 3.0 years ago by eshelden ▴ 40 • written 3.2 years ago by saddamhusain77 • 0

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246

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IsoformSwitchAnalyzeR

updated 11 months ago by k.vitting.seerup ▴ 100 • written 11 months ago by jbono ▴ 10

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706

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isoforms diffrential expression noncoding rna TSIS isoformswitchanalyzeR

4.0 years ago rbenel ▴ 20

9 results • Page 1 of 1

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Comment: Italicise by Pau • 0

They're the same: example of the vignette: "italic('VCAM1')" and result from my data: "italic('CARS1')" As I am running against time be…

Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0

Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.

Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values by wahaha • 0

I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…

Answer: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…

Comment: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…

Votes

Answer: DESeq2 how to specify contrast to test difference of differences

Comment: DESeq2 how to specify contrast to test difference of differences

Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a

Answer: biomaRt error unable to fix: need help troubleshooting

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

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Scholar to Nicole • 0

Teacher to Michael Love 37k