Bioconductor Liftover

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1.0k

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liftOver SNP GWASTools

2.6 years ago bonheur • 0

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2.7k

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lifto liftOver

updated 3.4 years ago by Marcel Ramos 700 • written 3.5 years ago by james.dalgleish • 0

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2.4k

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liftOver rtracklayer

updated 4.7 years ago by James W. MacDonald 68k • written 4.7 years ago by Mikhail Dozmorov ▴ 30

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2.3k

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liftOver

updated 4.9 years ago by shepherl 4.2k • written 4.9 years ago by bluepebbles • 0

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1.3k

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liftOver

5.0 years ago geneprophet • 0

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1.8k

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hg19 liftover matrixeqtl DMRcate

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by yoursbassanio ▴ 10

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1.7k

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rtracklayer export.bw liftover

updated 6.9 years ago by Michael Lawrence ★ 11k • written 6.9 years ago by ang ▴ 20

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1.6k

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rtracklayer liftOver parameters minMatch

updated 7.6 years ago by Michael Lawrence ★ 11k • written 7.6 years ago by Nik dAK ▴ 10

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3.8k

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rtracklayer liftover bioconductor R

updated 8.2 years ago by Michael Lawrence ★ 11k • written 8.2 years ago by m.guelfi • 0

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2.2k

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liftover rtracklayer

updated 8.2 years ago by Michael Lawrence ★ 11k • written 8.2 years ago by beausoleilmo • 0

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3.0k

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software error liftOver workflowinstall package installation

updated 9.1 years ago by James W. MacDonald 68k • written 9.1 years ago by JustGettinStarted • 0

11 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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