Bioconductor Liftover

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847

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liftOver SNP GWASTools

2.0 years ago bonheur • 0

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2.3k

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lifto liftOver

updated 2.9 years ago by Marcel Ramos 700 • written 2.9 years ago by james.dalgleish • 0

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2.1k

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liftOver rtracklayer

updated 4.1 years ago by James W. MacDonald 68k • written 4.2 years ago by Mikhail Dozmorov ▴ 30

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2.0k

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liftOver

updated 4.3 years ago by shepherl 4.1k • written 4.4 years ago by bluepebbles • 0

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liftOver

4.4 years ago geneprophet • 0

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1.6k

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hg19 liftover matrixeqtl DMRcate

updated 5.8 years ago by James W. MacDonald 68k • written 5.8 years ago by yoursbassanio ▴ 10

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1.5k

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rtracklayer export.bw liftover

updated 6.3 years ago by Michael Lawrence ★ 11k • written 6.3 years ago by ang ▴ 20

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1.5k

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rtracklayer liftOver parameters minMatch

updated 7.0 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by Nik dAK ▴ 10

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3.5k

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rtracklayer liftover bioconductor R

updated 7.6 years ago by Michael Lawrence ★ 11k • written 7.6 years ago by m.guelfi • 0

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2.0k

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liftover rtracklayer

updated 7.7 years ago by Michael Lawrence ★ 11k • written 7.7 years ago by beausoleilmo • 0

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2.7k

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software error liftOver workflowinstall package installation

updated 8.5 years ago by James W. MacDonald 68k • written 8.5 years ago by JustGettinStarted • 0

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Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

I am not sure this has anything to do with it but i had to run the following as tximport wouldn't allow me to import abundance_1.h5 files t…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

1 2 3 Error in H5Dclose(h5dataset) : HDF5. Dataset. Unable to decrement reference count. ``` > traceback() 5: H5Dclose(h5dataset) 4: rhd…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by wuwenhui2 • 0

Thanks, I figured it out.

Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati by Mei • 0

I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I a…

Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Arctic • 0

Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…

Votes

what the test method for enrichGO in clusterProfiler?

A: single-cells RNA-seq analysis by MAST with unbalanced group size

Comment: plyranges: find exact GRanges match keeping metadata columns

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran

Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

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