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liftover
•
reset
0
votes
0
replies
983
views
Human to mouse SNP conversion
liftOver
SNP
GWASTools
2.6 years ago
bonheur
• 0
2
votes
2
replies
2.6k
views
broken chain import in liftOver
lifto
liftOver
updated 3.4 years ago by
Marcel Ramos
700 • written 3.4 years ago by
james.dalgleish
• 0
2
votes
3
replies
2.4k
views
liftOver bug, reproducible
liftOver
rtracklayer
updated 4.7 years ago by
James W. MacDonald
68k • written 4.7 years ago by
Mikhail Dozmorov
▴ 30
0
votes
1
reply
2.2k
views
How to convert build 37 to build 38?
liftOver
updated 4.9 years ago by
shepherl
4.2k • written 4.9 years ago by
bluepebbles
• 0
0
votes
0
replies
1.3k
views
liftOver (R-package) how to recognize the "#Partially deleted in new" in the result ???
liftOver
4.9 years ago
geneprophet
• 0
1
vote
3
replies
1.7k
views
DMRcate liftover to grch38
hg19
liftover
matrixeqtl
DMRcate
updated 6.4 years ago by
James W. MacDonald
68k • written 6.4 years ago by
yoursbassanio
▴ 10
0
votes
1
reply
1.6k
views
rtracklayer::Problem with export.bw of GRanges object created by unlisted after liftover from mm9 to mm10 of wig file
rtracklayer
export.bw
liftover
updated 6.9 years ago by
Michael Lawrence
★ 11k • written 6.9 years ago by
ang
▴ 20
0
votes
1
reply
1.6k
views
rtracklayer::liftOver parameters (minMatch)
rtracklayer
liftOver
parameters
minMatch
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
Nik dAK
▴ 10
2
votes
3
replies
3.8k
views
rtracklayer::lifOver one-to-many regions and not match UCSC
rtracklayer
liftover
bioconductor
R
updated 8.2 years ago by
Michael Lawrence
★ 11k • written 8.2 years ago by
m.guelfi
• 0
0
votes
2
replies
2.2k
views
liftOver function in rtracklayer package is not working
liftover
rtracklayer
updated 8.2 years ago by
Michael Lawrence
★ 11k • written 8.2 years ago by
beausoleilmo
• 0
2
votes
10
replies
2.9k
views
Trouble Installing lifOver workflow
software error
liftOver
workflowinstall
package installation
updated 9.0 years ago by
James W. MacDonald
68k • written 9.0 years ago by
JustGettinStarted
• 0
11 results • Page
1 of 1
Recent ...
Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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Michael Love
43k
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68k
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Gordon Smyth
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