Showing : limmaGUI • reset
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getting normexp (and log2 transformed) values - not further-processed M values
Microarray limma limmaGUI Microarray limma limmaGUI
14.6 years ago adoty@umd.edu ▴ 30
0
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6
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2.2k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 15.7 years ago by ▴ 10 • written 15.8 years ago by ▴ 50
0
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9
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1.9k
views
Getting LimmaGUI to run
tkWidgets widgetTools limmaGUI widgetInvoke tkWidgets widgetTools limmaGUI widgetInvoke
18.8 years ago chris umbricht ▴ 110
1
vote
5
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2.8k
views
Using Limma for proteomics (2D DIGE) datasets
Proteomics limma impute limmaGUI Proteomics limma impute limmaGUI
updated 8.8 years ago by • 0 • written 14.5 years ago by ▴ 60
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4
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1.0k
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LimmaGUI discards spots with no signal on one channel?
limma limmaGUI limma limmaGUI
19.1 years ago Gordon Smyth 50k
3
votes
6
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6.6k
views
Unable to install "limma" package on RStudio
Bioconductor limma limmaGUI
2.2 years ago jaydengitt • 0
0
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3
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1.4k
views
LimmaGUI Error
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
18.8 years ago Brooke-Powell, Elizabeth ▴ 170
0
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3
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2.0k
views
Limma: correct calculation of B statistics (log odds)
limma limmaGUI limma limmaGUI
updated 18.0 years ago by ▴ 290 • written 18.0 years ago by ★ 1.9k
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2
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1.3k
views
"limma" and "Imagene"
GUI limma limmaGUI GUI limma limmaGUI
updated 19.8 years ago by 50k • written 19.8 years ago by ▴ 50
0
votes
2
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952
views
Limma and limmaGUI with Imagene files, problems/bugs report
limma limmaGUI ASSIGN limma limmaGUI ASSIGN
updated 19.4 years ago by 50k • written 19.4 years ago by ▴ 50
0
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3
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1.3k
views
limma: print-tip loess and empty spots
Normalization GO GUI limma limmaGUI Normalization GO GUI limma limmaGUI
16.9 years ago Gordon Smyth 50k
0
votes
3
replies
1.2k
views
spot filtering
limma limmaGUI limma limmaGUI
updated 18.8 years ago by ★ 3.4k • written 18.8 years ago by ▴ 170
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3
replies
1.3k
views
duplicate correlation of 4 "within array replicates" limmaGUI
GUI limma limmaGUI microRNA GUI limma limmaGUI microRNA
15.6 years ago Gordon Smyth 50k
0
votes
6
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1.4k
views
LimmaGUI Spot Quality
limmaGUI limmaGUI
updated 19.8 years ago by 50k • written 19.8 years ago by ▴ 160
0
votes
2
replies
1.2k
views
problem detected during utilization of LimmaGUI
Microarray limmaGUI Microarray limmaGUI
updated 14.4 years ago by ★ 7.4k • written 14.4 years ago by ▴ 10
1
vote
3
replies
342
views
Why is my gene not significantly differentially expressed?
limmaGUI edgeR limma
updated 17 days ago by 50k • written 22 days ago by • 0
0
votes
2
replies
2.3k
views
limma, spot and technical replicates
Genetics limma limmaGUI Genetics limma limmaGUI
updated 18.5 years ago by ▴ 150 • written 18.5 years ago by ▴ 110
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2
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873
views
Problem loading files into limmaGUI
limma limmaGUI limma limmaGUI
updated 19.9 years ago by 50k • written 19.9 years ago by ▴ 10
1
vote
3
replies
3.5k
views
Limma: correct calculation of B statistics (log odds)
Microarray Genetics limma limmaGUI Microarray Genetics limma limmaGUI
updated 18.0 years ago by ★ 1.9k • written 18.0 years ago by 50k
0
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2
replies
796
views
gcrma in affylmGUI
gcrma limmaGUI gcrma limmaGUI
updated 19.9 years ago by ▴ 1000 • written 20.0 years ago by ▴ 90
0
votes
2
replies
1.2k
views
limma Normalization question
Genetics Normalization limma GeneSpring limmaGUI Genetics Normalization limma GeneSpring
18.5 years ago Gordon Smyth 50k
0
votes
2
replies
1.1k
views
help for limmaGUI
Microarray limmaGUI Microarray limmaGUI
updated 16.9 years ago by ★ 1.9k • written 16.9 years ago by ▴ 10
0
votes
2
replies
1.4k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 15.8 years ago by ▴ 90 • written 15.8 years ago by ▴ 140
0
votes
2
replies
1.1k
views
limmaGUI: Warning: ActiveTcl could not be found...
limmaGUI limmaGUI
updated 20.6 years ago by ▴ 770 • written 20.6 years ago by ▴ 1000
0
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2
replies
2.2k
views
problem with tkrplot installation
limmaGUI limmaGUI
updated 15.7 years ago by 65k • written 15.7 years ago by ▴ 20
0
votes
1
reply
904
views
limmaGUI and Agilent output files!
Microarray limmaGUI Microarray limmaGUI
updated 19.8 years ago by ▴ 1000 • written 19.8 years ago by ▴ 30
0
votes
1
reply
790
views
Setting the spacing between duplicates in limmaGUI
limmaGUI limmaGUI
updated 20.6 years ago by 50k • written 20.6 years ago by ▴ 80
0
votes
1
reply
958
views
LimmaGUI
limmaGUI limmaGUI
updated 20.2 years ago by 65k • written 20.2 years ago by ▴ 100
0
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3
replies
2.2k
views
Limma: background correction. Use or ignore?
Microarray Cancer affy limma limmaGUI Microarray Cancer affy limma limmaGUI
updated 18.1 years ago by ★ 1.9k • written 18.1 years ago by 50k
0
votes
1
reply
848
views
LimmaGUI and limma
limma limmaGUI limma limmaGUI
updated 19.7 years ago by ▴ 1000 • written 19.7 years ago by ▴ 100
0
votes
1
reply
2.0k
views
Limma user’s guide example data sets
Microarray limma limmaGUI weaver Microarray limma limmaGUI weaver
updated 15.9 years ago by ▴ 130 • written 15.9 years ago by ▴ 450
0
votes
1
reply
1.1k
views
Re: Limma GUI exporting
Microarray limma affylmGUI limmaGUI Microarray limma affylmGUI limmaGUI
19.9 years ago James Wettenhall ▴ 1000
0
votes
1
reply
1.2k
views
One-Color Agilent Data into Limma GUI
GO limma limmaGUI GO limma limmaGUI
updated 16.6 years ago by ★ 1.9k • written 16.6 years ago by ▴ 230
0
votes
2
replies
1.2k
views
limmaGUI: target file and spot file
limmaGUI limmaGUI
updated 15.8 years ago by ▴ 910 • written 15.8 years ago by ▴ 10
0
votes
1
reply
1.1k
views
asMatrixWeights: weights of unexpected shape
GUI limma limmaGUI GUI limma limmaGUI
updated 15.6 years ago by ▴ 90 • written 15.6 years ago by 50k
0
votes
1
reply
1.6k
views
statistics for differential expression: adjusted p-values<0.05 BUT negative B-odds?
Normalization limma limmaGUI Normalization limma limmaGUI
updated 15.5 years ago by ▴ 320 • written 15.5 years ago by ▴ 90
0
votes
1
reply
1.1k
views
Duplicated spots in limmaGUI
limmaGUI limmaGUI
updated 17.0 years ago by ▴ 500 • written 17.1 years ago by ▴ 80
0
votes
1
reply
1.1k
views
[Bioc] Tcl/TK pckage "Bwidget"
limmaGUI limmaGUI
updated 17.0 years ago by ▴ 10 • written 17.0 years ago by 21k
0
votes
1
reply
1.1k
views
Re-scaling MA plot Y axis in LimmaGUI?
GUI limma limmaGUI GUI limma limmaGUI
18.4 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
1
reply
1.1k
views
reference design
limma limmaGUI oligo limma limmaGUI oligo
updated 18.0 years ago by ★ 6.0k • written 18.0 years ago by ▴ 30
0
votes
2
replies
888
views
How to do normalization without background subtraction in limmaGUI or limma?
Normalization limmaGUI Normalization limmaGUI
updated 20.5 years ago by 50k • written 20.5 years ago by ▴ 40
0
votes
1
reply
779
views
Bioconductor or R courses
GO limma limmaGUI GO limma limmaGUI
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 170
0
votes
1
reply
797
views
limmaGUI and dupcor.series error
limmaGUI limmaGUI
updated 19.9 years ago by ▴ 1000 • written 19.9 years ago by ▴ 760
0
votes
1
reply
1.0k
views
Limma - Design related problem: Unconnected design and time-treatment interaction estimation
Microarray Cancer limma limmaGUI Microarray Cancer limma limmaGUI
updated 17.2 years ago by ★ 6.0k • written 17.2 years ago by ▴ 90
0
votes
2
replies
852
views
Fwd: Getting LimmaGUI to run
limmaGUI limmaGUI
updated 18.8 years ago by ▴ 40 • written 18.8 years ago by ▴ 110
0
votes
2
replies
1.2k
views
limmaGUI: Warning: ActiveTcl could not be found....
limmaGUI limmaGUI
updated 20.6 years ago by ▴ 810 • written 20.6 years ago by ▴ 770
0
votes
1
reply
881
views
problem in limmaGUI with Heat Diagram
limma limmaGUI limma limmaGUI
updated 19.4 years ago by ▴ 1000 • written 19.4 years ago by ▴ 50
0
votes
1
reply
1.5k
views
Analysis Interface Projects
limma limmaGUI limma limmaGUI
updated 20.7 years ago by ▴ 160 • written 20.7 years ago by ▴ 1000
0
votes
2
replies
984
views
Limma: background correction. Use or ignore?
limmaGUI limmaGUI
updated 18.1 years ago by 65k • written 18.1 years ago by ★ 1.9k
0
votes
1
reply
871
views
Different results Limma vs LimmaGUI?
limma limmaGUI limma limmaGUI
updated 18.1 years ago by ★ 1.9k • written 18.1 years ago by 50k
50 results • Page 1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Answer: Once again a "Model matrix not full rank" by James W. MacDonald 65k
The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …
Answer: DESeq2 v1.35.0 by Michael Love 41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by James W. MacDonald 65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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