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"Frozen" RUVseq normalization
RUVseq machine learning
5.6 years ago acquaviva.massimo • 0
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Job: Postdoc/research scientist in bioinformatics, Lund, Sweden
machine learning variation interpretation Job
5.8 years ago mauno.vihinen • 0
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Job: 3.5 year cancer data scientist postdoc @ UEA, Norwich, UK
prostate cancer machine learning data science genomics Job
6.2 years ago • updated 5.9 years ago Daniel Brewer ▴ 100
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Job: EU/UK funded PhD Studentship - Applying machine learning techniques to Next Generation Sequencing Big Data to improve Prostate Cancer patient outcome…
phd machine learning next generation sequencing prostate cancer Job
6.6 years ago Daniel Brewer ▴ 100
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Job: Research Fellow, Computational Multi-Omics of Cancer (University College London)
cancer multi-omics genomic instability machine learning data integration Job
6.7 years ago msecrier ▴ 20
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Problems with cholesky decomposition in pRoloc package
pRoloc machine learning cholesky
6.7 years ago robinkretz • 0
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Job: Research Fellow, Computational Cancer Genomics (University College London)
cancer genomics machine learning data integration multi-omics Job
6.9 years ago msecrier ▴ 20
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Data preparation and Machine learning on time course RNAseq data
machine learning deep learning RNAseq MLSeq
6.9 years ago A ▴ 60
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RNA seq analysis
rnaseq machine learning
7.0 years ago marak • 0
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feature reduction using machine learning
rnaseq machine learning feature selection
updated 7.0 years ago by ▴ 420 • written 7.0 years ago by • 0
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Job: 2 Postdoc and 2 PhD positions in Regulatory genomics / Rare disease Gagneur lab, TU Munich
genomics genetics machine learning Job
7.1 years ago gagneur ▴ 10
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Job: Postdoctoral Research Fellowship- reinforcement learning in biology- London
job bioinformatician job machine learning gene expression experimental design Job
7.2 years ago dezer ▴ 10
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brnn package (Bayesian regularization for feed-forward neural networks)
R machine learning brnn caret
7.5 years ago elisa.micarelli ▴ 10
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Job: Summer Vacation Studentships in Data Science, MRC Cancer Unit, University of Cambridge, UK
data science data visualization machine learning cancer Job
7.6 years ago • updated 7.5 years ago Shamith.Samarajiwa ▴ 180
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Job: Postdoctoral Research Associate (Fixed Term) - Data Scientist / Computational Biologist, University of Cambridge, UK
data science machine learning deep learning computational biology Job
7.7 years ago Shamith.Samarajiwa ▴ 180
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Job: Post Doctoral position in AI (Deep learning / Machine learning) approaches for Cancer Research, MRC Cancer Unit, University of Cambridge, UK
job Job machine learning deep learning computational biology
written 7.9 years ago by ▴ 180
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Job: Postdoctoral and other positions in bioinformatics, Vanderbilt University, Nashville, USA
machine learning bioinformatics data science circadian rhythms Job
7.8 years ago Jake • 0
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Job: junior level position in proteomics/data science
proteomics machine learning git docker Job
updated 7.9 years ago by • 0 • written 8.2 years ago by ▴ 70
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Job: Bioinformatician/Computational Biologist - Dublin City, Ireland
bioinformatician job computational biology genomes pathways machine learning Job
8.1 years ago bulfin.triona ▴ 10
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Job: PhD and MSc positions at KAUST
job MSc PhD machine learning Job
8.2 years ago senaykafkas • 0
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Job: Postdoc in Bioinformatics for Cancer Genomics
cancer genomics bioinformatics machine learning next-generation sequencing Job
8.5 years ago yang4414 • 0
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Job: Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R python deep learning machine learning cancer genomics Job
8.7 years ago Shamith.Samarajiwa ▴ 180
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Job: PhD position at CRUK Manchester Institute
Prostate cancer noncoding rna biomarkers machine learning Job
9.7 years ago Hui Sun Leong ▴ 10
23 results • Page 1 of 1
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
Popular Question to James W. MacDonald 68k
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