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Showing :
maketxdbfromgff
•
reset
2
votes
3
replies
1.8k
views
Problem with MakeTxDbFromGFF
makeTxDbFromGff
written 2.7 years ago by
stacy.genovese
• 0
3
votes
4
replies
4.0k
views
Saving and retrieving TxDB object
makeTxDBFromGFF
EISA
updated 5.2 years ago by
James W. MacDonald
68k • written 5.2 years ago by
nishanthemje
• 0
0
votes
0
replies
2.0k
views
error with makeTxDbFromGFF
genomicfeatures
gff
custom genome
makeTxDbFromGFF
makeTxDbFromGRanges
6.6 years ago
xvazquezc
• 0
0
votes
1
reply
1.6k
views
Error in .merge_transcript_parts(transcripts)
maketxdbfromgff
7.0 years ago
csijcs
• 0
0
votes
2
replies
2.9k
views
makeTxDbFromGFF errors too many NAs and make.splicings
maketxdbfromgff
limma
updated 7.1 years ago by
Hervé Pagès
16k • written 7.1 years ago by
Karl Lundén
▴ 20
0
votes
1
reply
1.9k
views
makeTxDbFromGFF error "stop codons that cannot be mapped to an exon"
genomicfeatures
txdb
maketxdbfromgff
updated 7.3 years ago by
daniel.vantwisk
▴ 50 • written 7.3 years ago by
marisa.e.miller
• 0
0
votes
0
replies
1.2k
views
Error using the makeTxDbFromGFF
maketxdbfromgff
7.8 years ago
bright602
• 0
0
votes
1
reply
4.6k
views
create a txdb using makeTxDbFromGFF
bioconductor
txdb
maketxdbfromgff
7.9 years ago
Nader.Aryamanesh
• 0
0
votes
3
replies
4.5k
views
makeTxDbFromGFF Error: subscript contains NAs
genomicfeatures
granges
maketxdbfromgff
updated 8.2 years ago by
Hervé Pagès
16k • written 8.3 years ago by
marc_bes
• 0
1
vote
2
replies
1.4k
views
Error while using GenomicFeatures package
genomicfeatures
maketxdbfromgff
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
TFony
▴ 10
3
votes
2
replies
2.7k
views
makeTxDbFromGFF drops genes which have multiple chromosome locations. (with iGenome GTF)
genomicfeatures
gtf
maketxdbfromgff
iGenome
updated 9.0 years ago by
Martin Morgan
25k • written 9.0 years ago by
Marlin
▴ 20
1
vote
2
replies
1.7k
views
mRNA start used instead of gene start in makeTxDbFromGFF
maketxdbfromgff
genomicfeatures
updated 9.5 years ago by
Hervé Pagès
16k • written 9.6 years ago by
TimothéeFlutre
▴ 80
4
votes
2
replies
1.7k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures
txdb
maketxdbfromgff
metadata
updated 9.5 years ago by
Valerie Obenchain
★ 6.8k • written 9.5 years ago by
TimothéeFlutre
▴ 80
0
votes
5
replies
2.3k
views
makeTxDbFromGFF returns empty object
genomicfeatures
txdb
maketxdbfromgff
9.6 years ago
TimothéeFlutre
▴ 80
0
votes
0
replies
1.2k
views
Annotation missing when using makeTxDbFromGFF
makeTxDbFromGFF
9.7 years ago
Udi Landau
▴ 30
8
votes
7
replies
4.6k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi
refseq
maketxdbfromgff
fetchExtendedChromInfoFromUCSC
genomeinfodb
updated 9.8 years ago by
Hervé Pagès
16k • written 9.8 years ago by
gokcen.eraslan
▴ 10
0
votes
7
replies
2.4k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures
maketxdbfromgff
tx_type
gtf
updated 10.0 years ago by
Hervé Pagès
16k • written 10.0 years ago by
Karolin Wiedemann
• 0
0
votes
0
replies
1.4k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures
maketxdbfromgff
tx_type
gtf
10.0 years ago
Karolin Wiedemann
• 0
0
votes
4
replies
2.5k
views
MakeTxDbFromGFF creates empty object
maketxdbfromgff
updated 10.0 years ago by
Hervé Pagès
16k • written 10.0 years ago by
rebecca.halbach
• 0
0
votes
7
replies
3.0k
views
makeTxDbFromGFF yields an empty TxDb
annotation
maketxdbfromgff
genomicfeatures
10.0 years ago
José Luis Lavín
▴ 10
0
votes
2
replies
2.7k
views
makeTxDbpackage after makeTxDbfromGFF --> Error in spc[[2]] : subscript out of bounds
gtf
TxDb
maketxdbfromgff
updated 10.4 years ago by
Hervé Pagès
16k • written 10.4 years ago by
yacine.badis
• 0
0
votes
2
replies
2.5k
views
makeTxDbFromGFF not capturing/displaying 'gene' records from GFF3 file.
genomicfeatures
makeTxDbFromGFF
updated 10.5 years ago by
Hervé Pagès
16k • written 10.5 years ago by
pterry
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
by
Matthew Thornton
▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated
by
RalphSavage99
• 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2
by
shepherl
4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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▴ 40
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Peter Hickey
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