Showing : mast • reset
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161
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Confidence interval contains 0 but p<0.05
MAST
3 months ago Adelyn • 0
3
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3
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1.1k
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Robust way of dealing with low number of samples for Differential Gene Expression
limma edgeR DESeq2 MAST
written 5 months ago by • 0
0
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1
reply
542
views
Which input data is acceptable for MAST?
SCTransform MAST
updated 5 months ago by ▴ 270 • written 5 months ago by • 0
0
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0
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384
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Z-score Interpretation across components
MAST
6 months ago GJ • 0
0
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0
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359
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MAST package: Most appropriate way to perform lrTest for effect of factor with multiple levels in pairwise manner?
MAST
8 months ago Kelly • 0
0
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0
replies
571
views
Linear Mixed Model for Differential Gene Expression in Single-Cell RNAseq with Batch Effects
lmer MAST DifferentialExpression
8 months ago nhaus ▴ 70
1
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2
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837
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Extracting genomic sequences using agat and bedtools yields different results
MAST
updated 12 months ago by ★ 4.8k • written 12 months ago by • 0
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0
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797
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Error: grouping factors must have > 1 sampled level
Mast mastR MAST
updated 12 months ago by 68k • written 12 months ago by • 0
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0
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399
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Comparing the effects of a condition over time in two seperate tissues
MAST
13 months ago Dillon • 0
0
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1
reply
756
views
Mismatch between MAST DE results and expression dot plot
MAST mastR
14 months ago Simon • 0
0
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0
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797
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How to extract P-Values and LogFC from lrTest in MAST?
pvalue logFC lrtest MAST
23 months ago Tadeoye ▴ 20
1
vote
7
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2.1k
views
Likelihood ratio test (lrTest) in MAST comparing full to reduced model; and another question on controlling for CDR
MAST
2.1 years ago • updated 2.0 years ago Ken C • 0
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0
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665
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MAST for single cell ATAC data
MAST
2.1 years ago zuljiamel1991 ▴ 10
2
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2
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2.5k
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Input for MAST
MAST
2.1 years ago zuljiamel1991 ▴ 10
0
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0
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1.5k
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How to interpret MAST coefficients
DifferentialExpression MAST
2.5 years ago Ismail • 0
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0
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743
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How does MAST caculate log fc
MAST
2.6 years ago Chenghao • 0
0
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0
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920
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Differential expression with single cell data: any good two component (hurdle) models recently?
SingleCellWorkflow DifferentialExpression SingleCell SingleCellMultiModal MAST
2.8 years ago Nik Tuzov ▴ 90
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0
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1.1k
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Performing DGE analysis with MAST on a variable with more than 2 levels
MAST DEG SingleCell
2.9 years ago zroger499 • 0
0
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1
reply
1.4k
views
Low logFCs using MAST for scRNA-seq
MAST
updated 7 months ago by ▴ 70 • written 3.0 years ago by • 0
0
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0
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1.1k
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Issues geting meaninfull results for single cell DGE using MAST
MAST SingleCell
3.2 years ago zroger499 • 0
1
vote
0
replies
862
views
When I run `zlm` with several clusters, how to compare 1 cluster versus all the others?
MAST
3.6 years ago Dan • 0
0
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1
reply
1.3k
views
Differentially expressed genes across three different conditions
MAST SingleCell diffGeneAnalysis
updated 3.7 years ago by 68k • written 3.7 years ago by • 0
0
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1
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1.2k
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MAST zlm shows warning: Coefficients ... are never estimible and will be dropped.
MAST
updated 3.8 years ago by • 0 • written 4.1 years ago by • 0
0
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1
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1.6k
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How to do pairwise multiple comparisons in MAST
MAST
updated 8 months ago by • 0 • written 4.1 years ago by • 0
0
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2
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1.5k
views
MAST compare two conditions with several donors
MAST
updated 4.1 years ago by • 0 • written 4.4 years ago by • 0
0
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3
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1.9k
views
MAST invalid Hypothesis, class objectORconnection error
R MAST scRNASeq
4.6 years ago TriS ▴ 200
1
vote
3
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1.7k
views
comparing 2 models with confounders with MAST (scRNA-seq DEA)
scRNA-seq MAST confounders
updated 5.2 years ago by ▴ 270 • written 5.2 years ago by ▴ 10
0
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1
reply
1.8k
views
About getting DE genes using MAST
MAST
updated 5.3 years ago by ▴ 270 • written 5.3 years ago by • 0
0
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0
replies
1.1k
views
DEG among experimental and control group in MAST
MAST DEG batch effects
5.5 years ago chendianyu • 0
0
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1
reply
2.3k
views
Minimum number of cells required for the MAST
MAST scRNAseq differential expression
5.6 years ago Andrew_McDavid ▴ 270
2
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3
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1.6k
views
Logistic regression in MAST - question
mast
updated 6.0 years ago by ▴ 270 • written 6.0 years ago by ▴ 90
2
votes
7
replies
2.2k
views
Estimation of non-trivial contrasts in MAST
mast
updated 6.1 years ago by ▴ 270 • written 6.1 years ago by ▴ 90
0
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1
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1.4k
views
How can I compute AIC for MAST hurdle model fitted in the whole dataset?
MAST AIC calcuation Parameters single cell hurdle model
updated 12 months ago by ▴ 30 • written 6.1 years ago by • 0
0
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2
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1.5k
views
Warning in bayes fit in MAST GSEA
MAST GSEA bayesglm.fit
6.6 years ago santos22903 • 0
0
votes
6
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1.9k
views
Error in zlm function model matrix
MAST
6.9 years ago jka8119 ▴ 10
2
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4
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2.4k
views
Interpretation of cngeneson when doing differential expression analysis in MAST
mast differential gene expression
updated 6.9 years ago by ▴ 270 • written 6.9 years ago by ▴ 40
2
votes
1
reply
1.3k
views
How to load data csv in MAST
mast
6.9 years ago francesco.brundu@gmail.com ▴ 40
2
votes
1
reply
3.1k
views
MAST: testing differential expression with a nested factorial design
MAST single-cell rna-seq
updated 6.9 years ago by ▴ 270 • written 7.0 years ago by ▴ 20
0
votes
4
replies
1.7k
views
MAST: What does the function gseaAfterBoot do exactly?
MAST
7.0 years ago dfm2129 • 0
0
votes
8
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2.4k
views
MAST - not getting Hurdle p values
MAST
updated 7.1 years ago by ▴ 270 • written 7.1 years ago by ▴ 10
2
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3
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2.5k
views
Using MAST with DropSeq data
MAST mast dropseq
updated 7.1 years ago by ▴ 270 • written 7.1 years ago by ▴ 10
4
votes
3
replies
2.5k
views
single-cells RNA-seq analysis by MAST with unbalanced group size
mast single-cell rna-seq differential analysis
updated 7.2 years ago by ▴ 270 • written 7.2 years ago by ▴ 100
0
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2
replies
1.7k
views
What is the most useful distance measure to use for cell clustering based on MAST deviance residuals?
MAST
7.5 years ago alexanderaivazidis • 0
3
votes
3
replies
3.2k
views
How do you test a contrast in MAST?
MAST single-cell differential gene expression
updated 7.5 years ago by ▴ 270 • written 7.5 years ago by ▴ 40
4
votes
1
reply
2.2k
views
NAs in continuous coefficient and fold change in `zlm`
scrnaseq MAST differential gene expression
7.6 years ago Andrew_McDavid ▴ 270
2
votes
1
reply
5.0k
views
Intepretation of Z scores for gene set enrichment analysis in MAST
MAST scRNA GSEA
updated 7.7 years ago by ▴ 270 • written 7.7 years ago by • 0
0
votes
3
replies
1.9k
views
Modeling Dose-response data in MAST
MAST sc-rnaseq scrnaseq
updated 7.7 years ago by ▴ 270 • written 7.7 years ago by • 0
0
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1
reply
1.6k
views
Removal of batch effects before non-linear clustering for scRNAseq
scrnaseq MAST
7.9 years ago Andrew_McDavid ▴ 270
3
votes
2
replies
2.8k
views
MAST reported warning "Coefficients ... are never estimible and will be dropped."
mast sc-rnaseq
8.0 years ago shao ▴ 100
49 results • Page 1 of 1
Recent ...
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Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k
The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…
Answer: Package developing and interoperation with Bioconductor by James W. MacDonald 68k
Ideally you would have S4 methods that dispatch on the incoming data structure, so people could call your main function using a `data.frame…
Comment: ComBat with repeated measures by ATpoint ★ 4.8k
It looks to me that you do not need the batch information since subject is nested with batch so correcting for subject will do a paired ana…
Comment: Surprising behavior for DEXseq dispersion estimate plot? by ATpoint ★ 4.8k
You realize this is a spam bot talking to you?
Comment: Merging EPICV1 and V2 betas by Garbayo • 0
[BitLife][1]: Life Simulator, usually referred to as BitLife, is a mobile life simulator game created by developer CandyWriter LLC on Septe…
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Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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