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metadata
•
reset
1
vote
2
replies
823
views
Obtain metadata for software packages in Bioconductor
metadata
2.9 years ago
Donghui
▴ 10
2
votes
2
replies
1.2k
views
How to access metadata of GAlignments objects
rtracklayer
Rsamtools
GAlignments
GRanges
metadata
updated 4.0 years ago by
Hervé Pagès
16k • written 4.0 years ago by
Robert
▴ 10
2
votes
1
reply
1.3k
views
combining columns for experimental design in DESeq2
deseq2
design
metadata
updated 4.3 years ago by
sebastian.lobentanzer
▴ 50 • written 4.3 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.1k
views
Recount2 TCGA metadata missing sample, run and experiment columns
recount
metadata
tcga
updated 6.2 years ago by
rosabellascottgm
• 0 • written 6.2 years ago by
Mariela Cortés-López
• 0
2
votes
2
replies
1.4k
views
[VariantAnnotation] Preserve query metadata with locateVariants()
variantannotation
locatevariants
metadata
mcols
updated 6.4 years ago by
Valerie Obenchain
★ 6.8k • written 6.4 years ago by
enricoferrero
▴ 660
4
votes
3
replies
4.7k
views
What is the proper way to modify mcols of a GRanges inside a GRangesList?
granges
metadata
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
4
replies
1.1k
views
Data structure for my dataset
metadata
grangeslist
granges
sample
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
Sim1pall8a
• 0
1
vote
2
replies
2.0k
views
Subsetting GRanges based on metadata
GRanges
metadata
subsetting
updated 7.7 years ago by
Michael Lawrence
★ 11k • written 7.7 years ago by
mdeea123
▴ 10
3
votes
7
replies
1.8k
views
Group GRanges and keep metadata
granges
metadata
coursera
updated 7.9 years ago by
Michael Lawrence
★ 11k • written 7.9 years ago by
likeeatingpizza
▴ 10
4
votes
2
replies
1.3k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures
txdb
maketxdbfromgff
metadata
updated 8.0 years ago by
Valerie Obenchain
★ 6.8k • written 8.0 years ago by
TimothéeFlutre
▴ 80
2
votes
3
replies
2.2k
views
Metadata Missing from vcf when reading in with readVcfAsVRanges
variantannotation
vranges
readvcf
readvcfasvranges
metadata
9.2 years ago
summerela
• 0
1
vote
3
replies
1.9k
views
Fast way to access metadata for GRangesList?
grangeslist
metadata
9.5 years ago
Robert K. Bradley
▴ 40
12 results • Page
1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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