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Showing :
epigenetics
•
reset
0
votes
0
replies
82
views
normalisation options in RnBeads
Epigenetics
RnBeads
R
Bioconducter
7 weeks ago
nabiyogesh
▴ 10
0
votes
0
replies
61
views
filtering options in RnBeads for array data
Epigenetics
RnBeads
MethylationArrayData
methylationArrayAnalysis
7 weeks ago
nabiyogesh
▴ 10
0
votes
8
replies
308
views
error in RnBeads installation
Epigenetics
RnBeads
R
10 weeks ago • updated 8 weeks ago
nabiyogesh
▴ 10
0
votes
2
replies
520
views
Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC
arrays
limma
minfi
Epigenetics
updated 18 months ago by
Gordon Smyth
45k • written 18 months ago by
Jeff
▴ 20
0
votes
0
replies
404
views
Job:
Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer
computational biology
bioinformatics
epigenetics
Job
2.2 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
441
views
Beta values and M values cluster differently
methylationEPIC
minfi
microarray
epigenetics
EPIC
3.2 years ago
rmf
▴ 20
0
votes
0
replies
404
views
Best normalisation method
microarray
methylationEPIC
epigenetics
minfi
EPIC
3.2 years ago
rmf
▴ 20
0
votes
0
replies
678
views
Job:
PhD computational position - Milan
epigenetics
transcription
computational biology
Job
4.8 years ago
mattia pelizzola
▴ 200
0
votes
1
reply
1.2k
views
Epigenetic clock (Horvath): package?
methylation
illimina 450k methylation
epigenetics
minfi
updated 5.2 years ago by
Wade Davis
▴ 60 • written 5.3 years ago by
Brian Smith
▴ 120
0
votes
1
reply
1.0k
views
News:
Plotly uprading issue in ChAMP package
ChAMP
Epigenetics
plotly
Shiny
GUI
News
5.6 years ago • updated 5.3 years ago
Yuan Tian
▴ 90
0
votes
0
replies
813
views
News:
ChAMP2 is online
epigenetics
EPIC
450K
ChAMP
News
5.6 years ago
Yuan Tian
▴ 90
0
votes
0
replies
2.2k
views
Job:
Bioinformatics Scientist position at Johns Hopkins
R
USA
Hopkins
GI Cancer
Epigenetics
Job
6.2 years ago
asharm37
• 0
1
vote
0
replies
1.3k
views
Job:
Post-doc Position in Epigenetic Bioinformatics
cancer
sequencing
epigenetics
computational biology
bioinformatics
Job
6.5 years ago
Yassen Assenov
▴ 10
0
votes
0
replies
1.1k
views
ChAMP: Error using champ.norm() function
ChAMP
methylation
epigenetics
6.6 years ago
jdangelo
• 0
0
votes
0
replies
1.1k
views
Job: Bioinformatics Analyst at Johns Hopkins Medical School (Masters or Ph.D.)
Sequencing
Epigenetics
PROcess
Sequencing
Epigenetics
PROcess
8.1 years ago
Brian Herb
▴ 80
0
votes
0
replies
1.4k
views
job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics
Infrastructure
Epigenetics
Infrastructure
8.4 years ago
Holger Klein
▴ 20
0
votes
0
replies
975
views
[Course] CSAMA 2013: Computational Statistics for Genome Biology (11th edition) Brixen, Italy, June 24-28th 2013
Sequencing
Epigenetics
Cancer
Sequencing
Epigenetics
Cancer
9.2 years ago
stefano iacus
▴ 430
0
votes
0
replies
1.0k
views
IS PROGRAMMER/ANALYST I / 40 HOUR / DAY / BWH - CHANNING LABORATORY
Epigenetics
Annotation
Network
Epigenetics
Annotation
Network
10.3 years ago
Guest User
★ 12k
0
votes
3
replies
864
views
how to install gnGNF1a cdf and probe files to a recent version of R (2.13.1)?
Epigenetics
cdf
Epigenetics
cdf
updated 10.4 years ago by
James W. MacDonald
59k • written 10.5 years ago by
Nicholas Wong
▴ 30
0
votes
0
replies
957
views
Position Assistant Professor Bioinformatics
Epigenetics
Epigenetics
10.7 years ago
Martin Zenke
▴ 10
0
votes
0
replies
1.4k
views
4 PhD positions in cancer computational biology
Sequencing
Epigenetics
Cancer
Sequencing
Epigenetics
Cancer
10.7 years ago
mattia pelizzola
▴ 200
0
votes
0
replies
1000
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq
ChIPSeq
Epigenetics
Cancer
chipseq
SANTA
RNASeq
ChIPSeq
Epigenetics
Cancer
SANTA
10.7 years ago
stefano iacus
▴ 430
0
votes
0
replies
921
views
Head of Junior Research Group - Bioinformatics
Epigenetics
Epigenetics
10.8 years ago
Qiong Lin
▴ 10
0
votes
3
replies
1.5k
views
edgeR - multiple comparisions
Epigenetics
GO
edgeR
Epigenetics
GO
edgeR
updated 11.0 years ago by
Sridhara Gupta Kunjeti
▴ 320 • written 11.0 years ago by
Davis McCarthy
▴ 260
0
votes
0
replies
1.3k
views
qPCR Events and 30% Discount on qPCR workshops
miRNA
qPCR
Epigenetics
GO
Visualization
Network
probe
microRNA
miRNA
qPCR
Epigenetics
12.6 years ago
qPCR Platform - the reference in real-t…
▴ 170
0
votes
2
replies
1.7k
views
pd.hugene.1.0.st.v1
Epigenetics
Annotation
oligo
Epigenetics
Annotation
oligo
updated 12.8 years ago by
Benilton Carvalho
★ 4.3k • written 12.8 years ago by
Mark Robinson
★ 1.1k
0
votes
0
replies
1.2k
views
Post-doc position in Paris
Sequencing
Epigenetics
Cancer
Breast
DECIPHER
Sequencing
Epigenetics
Cancer
Breast
12.9 years ago
Joern Toedling
▴ 450
0
votes
0
replies
796
views
Bioinformatics postdoc in Brussels
Sequencing
Epigenetics
Cancer
Breast
Sequencing
Epigenetics
Cancer
Breast
13.2 years ago
Vincent Detours
▴ 80
0
votes
0
replies
644
views
browseGenome width question (rtracklayer)
Epigenetics
GO
hgu95av2
GLAD
rtracklayer
Epigenetics
GO
hgu95av2
GLAD
rtracklayer
13.3 years ago
Michael Lawrence
▴ 620
0
votes
0
replies
802
views
sd==0 for some probesets when using gcrma
Microarray
Proteomics
Epigenetics
Normalization
GO
Cancer
hgu95av2
affy
graph
gcrma
GO
13.4 years ago
Dick Beyer
★ 1.4k
0
votes
1
reply
821
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics
cdf
affy
makecdfenv
plier
affxparser
preprocessCore
Epigenetics
cdf
affy
updated 13.5 years ago by
dorothyc
▴ 140 • written 13.5 years ago by
James W. MacDonald
59k
0
votes
0
replies
902
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics
Cancer
probe
affy
xps
Epigenetics
Cancer
probe
affy
xps
13.8 years ago
Martin Morgan
25k
0
votes
1
reply
733
views
Fwd: biomaRt column order
Epigenetics
biomaRt
Epigenetics
biomaRt
13.9 years ago • updated 13.8 years ago
steffen@stat.Berkeley.EDU
▴ 600
0
votes
0
replies
533
views
[ Re: Fwd: biomaRt column order]
Epigenetics
biomaRt
Epigenetics
biomaRt
13.9 years ago
steffen@stat.Berkeley.EDU
▴ 600
0
votes
0
replies
1.2k
views
Bioinformatics Positions, National Cancer Centre Singapore
Microarray
Epigenetics
Cancer
Microarray
Epigenetics
Cancer
14.0 years ago
Julian Lee
▴ 140
0
votes
0
replies
1.2k
views
Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics
Bayesian
Cancer
Breast
Epigenetics
Bayesian
Cancer
Breast
14.3 years ago
Jean Yee Hwa Yang
▴ 130
0
votes
0
replies
910
views
Bioinformatics positions
Microarray
Genetics
Proteomics
Epigenetics
Microarray
Genetics
Proteomics
Epigenetics
14.5 years ago
French, Jef NIH/NIEHS
▴ 30
37 results • Page
1 of 1
Recent ...
Replies
Comment: Quantile Normalization after rma or not?
by
Yang Shi
• 0
Thanks you so much sir! But I'm still confused with the boxplot showing here. Why oligo::rma could not get the plot like limma::normalizeBe…
Answer: how to understand cpm=1 and how filterByExpr works?
by
gowthamee
• 0
I found the following two articles very helpful in explaining the functions "cpm" and "filterByExpr" Article#1: From reads to genes to pat…
Comment: different results in DESeq2 when comparing groups in two ways
by
zohreh.fazelan
• 0
Thank you for your response. But I have few comparisons in which there are more significantly expressed genes in the socond way compared to…
Comment: lmFit, continuous exposure, adjustment covariates
by
Gordon Smyth
45k
Your code `t(dat[43:ncol(dat)]` is not even syntactically correct. It could not possibly run in R. You need to create an expression matrix…
Comment: Handling of missing values in limma
by
Gordon Smyth
45k
limma uses all the observations. There's nothing complicated about it. limma does not remove any persons from the analysis. I did not tel…
Votes
A: redundant probe sets in Affymetrix HG-U219
Answer: Quantile Normalization after rma or not?
Answer: Quantile Normalization after rma or not?
Answer: Using featureCounts and downloading Rsubread
Answer: different results in DESeq2 when comparing groups in two ways
Awards
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to
James W. MacDonald
59k
Popular Question
to
Rory Stark
★ 4.4k
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to
Gyan Prakash Mishra
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to
ATpoint
★ 1.2k
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to
Gordon Smyth
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