Showing : epigenetics • reset
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normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
7 weeks ago nabiyogesh ▴ 10
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
7 weeks ago nabiyogesh ▴ 10
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error in RnBeads installation
Epigenetics RnBeads R
10 weeks ago • updated 8 weeks ago nabiyogesh ▴ 10
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Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC arrays limma minfi Epigenetics
updated 18 months ago by 45k • written 18 months ago by ▴ 20
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
2.2 years ago Shamith.Samarajiwa ▴ 180
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Beta values and M values cluster differently
methylationEPIC minfi microarray epigenetics EPIC
3.2 years ago rmf ▴ 20
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Best normalisation method
microarray methylationEPIC epigenetics minfi EPIC
3.2 years ago rmf ▴ 20
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678
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Job: PhD computational position - Milan
epigenetics transcription computational biology Job
4.8 years ago mattia pelizzola ▴ 200
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 5.2 years ago by ▴ 60 • written 5.3 years ago by ▴ 120
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News: Plotly uprading issue in ChAMP package
ChAMP Epigenetics plotly Shiny GUI News
5.6 years ago • updated 5.3 years ago Yuan Tian ▴ 90
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News: ChAMP2 is online
epigenetics EPIC 450K ChAMP News
5.6 years ago Yuan Tian ▴ 90
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Job: Bioinformatics Scientist position at Johns Hopkins
R USA Hopkins GI Cancer Epigenetics Job
6.2 years ago asharm37 • 0
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Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
6.5 years ago Yassen Assenov ▴ 10
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ChAMP: Error using champ.norm() function
ChAMP methylation epigenetics
6.6 years ago jdangelo • 0
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Job: Bioinformatics Analyst at Johns Hopkins Medical School (Masters or Ph.D.)
Sequencing Epigenetics PROcess Sequencing Epigenetics PROcess
8.1 years ago Brian Herb ▴ 80
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job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics Infrastructure Epigenetics Infrastructure
8.4 years ago Holger Klein ▴ 20
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[Course] CSAMA 2013: Computational Statistics for Genome Biology (11th edition) Brixen, Italy, June 24-28th 2013
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
9.2 years ago stefano iacus ▴ 430
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IS PROGRAMMER/ANALYST I / 40 HOUR / DAY / BWH - CHANNING LABORATORY
Epigenetics Annotation Network Epigenetics Annotation Network
10.3 years ago Guest User ★ 12k
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how to install gnGNF1a cdf and probe files to a recent version of R (2.13.1)?
Epigenetics cdf Epigenetics cdf
updated 10.4 years ago by 59k • written 10.5 years ago by ▴ 30
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Position Assistant Professor Bioinformatics
Epigenetics Epigenetics
10.7 years ago Martin Zenke ▴ 10
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4 PhD positions in cancer computational biology
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
10.7 years ago mattia pelizzola ▴ 200
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1000
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[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA
10.7 years ago stefano iacus ▴ 430
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Head of Junior Research Group - Bioinformatics
Epigenetics Epigenetics
10.8 years ago Qiong Lin ▴ 10
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1.5k
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edgeR - multiple comparisions
Epigenetics GO edgeR Epigenetics GO edgeR
updated 11.0 years ago by ▴ 320 • written 11.0 years ago by ▴ 260
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qPCR Events and 30% Discount on qPCR workshops
miRNA qPCR Epigenetics GO Visualization Network probe microRNA miRNA qPCR Epigenetics
12.6 years ago qPCR Platform - the reference in real-t… ▴ 170
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1.7k
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pd.hugene.1.0.st.v1
Epigenetics Annotation oligo Epigenetics Annotation oligo
updated 12.8 years ago by ★ 4.3k • written 12.8 years ago by ★ 1.1k
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
12.9 years ago Joern Toedling ▴ 450
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Bioinformatics postdoc in Brussels
Sequencing Epigenetics Cancer Breast Sequencing Epigenetics Cancer Breast
13.2 years ago Vincent Detours ▴ 80
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browseGenome width question (rtracklayer)
Epigenetics GO hgu95av2 GLAD rtracklayer Epigenetics GO hgu95av2 GLAD rtracklayer
13.3 years ago Michael Lawrence ▴ 620
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sd==0 for some probesets when using gcrma
Microarray Proteomics Epigenetics Normalization GO Cancer hgu95av2 affy graph gcrma GO
13.4 years ago Dick Beyer ★ 1.4k
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Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 13.5 years ago by ▴ 140 • written 13.5 years ago by 59k
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Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics Cancer probe affy xps Epigenetics Cancer probe affy xps
13.8 years ago Martin Morgan 25k
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Fwd: biomaRt column order
Epigenetics biomaRt Epigenetics biomaRt
13.9 years ago • updated 13.8 years ago steffen@stat.Berkeley.EDU ▴ 600
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[ Re: Fwd: biomaRt column order]
Epigenetics biomaRt Epigenetics biomaRt
13.9 years ago steffen@stat.Berkeley.EDU ▴ 600
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Bioinformatics Positions, National Cancer Centre Singapore
Microarray Epigenetics Cancer Microarray Epigenetics Cancer
14.0 years ago Julian Lee ▴ 140
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Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics Bayesian Cancer Breast Epigenetics Bayesian Cancer Breast
14.3 years ago Jean Yee Hwa Yang ▴ 130
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Bioinformatics positions
Microarray Genetics Proteomics Epigenetics Microarray Genetics Proteomics Epigenetics
14.5 years ago French, Jef NIH/NIEHS ▴ 30
37 results • Page 1 of 1
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Replies
Comment: Quantile Normalization after rma or not? by Yang Shi • 0
Thanks you so much sir! But I'm still confused with the boxplot showing here. Why oligo::rma could not get the plot like limma::normalizeBe…
Answer: how to understand cpm=1 and how filterByExpr works? by gowthamee • 0
I found the following two articles very helpful in explaining the functions "cpm" and "filterByExpr" Article#1: From reads to genes to pat…
Comment: different results in DESeq2 when comparing groups in two ways by zohreh.fazelan • 0
Thank you for your response. But I have few comparisons in which there are more significantly expressed genes in the socond way compared to…
Comment: lmFit, continuous exposure, adjustment covariates by Gordon Smyth 45k
Your code `t(dat[43:ncol(dat)]` is not even syntactically correct. It could not possibly run in R. You need to create an expression matrix…
Comment: Handling of missing values in limma by Gordon Smyth 45k
limma uses all the observations. There's nothing complicated about it. limma does not remove any persons from the analysis. I did not tel…
Votes
A: redundant probe sets in Affymetrix HG-U219
Answer: Quantile Normalization after rma or not?
Answer: Quantile Normalization after rma or not?
Answer: Using featureCounts and downloading Rsubread
Answer: different results in DESeq2 when comparing groups in two ways
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