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methylationEPIC
•
reset
0
votes
3
replies
1.6k
views
MINFI missing samples in qcreports and densityplots
minfi
illumina
methylationEPIC
densityplot
7.3 years ago
annabelle.congras
▴ 10
3
votes
6
replies
2.1k
views
could not find function "champ.load"
ChAMP
champ 2.9.10
methylationepic
6.1 years ago
david.ch
• 0
0
votes
2
replies
1.9k
views
Illumina methylationEPIC demo data in IDAT format?
methylation
illumina
EPIC
methylationepic
idat
updated 7.0 years ago by
Guido Hooiveld
★ 3.9k • written 7.0 years ago by
Ellen O
• 0
3
votes
4
replies
3.0k
views
Error while using champ.svd() function in subset of data
ChAMP
methylationepic
epicarray
epigenomics
updated 6.6 years ago by
rcavalca
▴ 140 • written 6.6 years ago by
karthikrpad
▴ 10
0
votes
4
replies
1.7k
views
minfi "mapToGenome" dimension error
methylation
epic microarray
minfi
methylationepic
7.2 years ago
nhejazi
• 0
0
votes
1
reply
1.9k
views
ChAMP Methylation analysis error code "could not find function champ.load"
champ
methylationepic
updated 6.3 years ago by
Yuan Tian
▴ 280 • written 6.3 years ago by
csappleby-mallinder1
• 0
0
votes
0
replies
828
views
Best normalisation method
microarray
methylationEPIC
epigenetics
minfi
EPIC
5.2 years ago
rmf
▴ 20
0
votes
0
replies
1.0k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
6.2 years ago
gabrielrfries
• 0
0
votes
0
replies
1.0k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.2 years ago
chelsey.ju
• 0
0
votes
0
replies
1.1k
views
Beta values and M values cluster differently
methylationEPIC
minfi
microarray
epigenetics
EPIC
5.2 years ago
rmf
▴ 20
0
votes
0
replies
903
views
Error when changing the database for minfi dropLociWithSnps
minfi
methylationepic
illuminahumanmethylationepicanno.ilmn10b.hg19
SNP
6.8 years ago
Ellen O
• 0
11 results • Page
1 of 1
Recent ...
Replies
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results
by
ATpoint
★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data
by
ATpoint
★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
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to
Robert Castelo
★ 3.3k
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to
Gyan Prakash Mishra
▴ 10
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to
Gordon Smyth
50k
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to
WouterDeCoster
▴ 130
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Michael Love
42k
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