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methylationEPIC
•
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3
votes
6
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2.1k
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could not find function "champ.load"
ChAMP
champ 2.9.10
methylationepic
6.1 years ago
david.ch
• 0
3
votes
4
replies
3.0k
views
Error while using champ.svd() function in subset of data
ChAMP
methylationepic
epicarray
epigenomics
updated 6.6 years ago by
rcavalca
▴ 140 • written 6.6 years ago by
karthikrpad
▴ 10
0
votes
4
replies
1.7k
views
minfi "mapToGenome" dimension error
methylation
epic microarray
minfi
methylationepic
7.2 years ago
nhejazi
• 0
0
votes
3
replies
1.6k
views
MINFI missing samples in qcreports and densityplots
minfi
illumina
methylationEPIC
densityplot
7.3 years ago
annabelle.congras
▴ 10
0
votes
2
replies
1.9k
views
Illumina methylationEPIC demo data in IDAT format?
methylation
illumina
EPIC
methylationepic
idat
updated 7.0 years ago by
Guido Hooiveld
★ 3.9k • written 7.0 years ago by
Ellen O
• 0
0
votes
1
reply
1.9k
views
ChAMP Methylation analysis error code "could not find function champ.load"
champ
methylationepic
updated 6.3 years ago by
Yuan Tian
▴ 280 • written 6.3 years ago by
csappleby-mallinder1
• 0
0
votes
0
replies
1.0k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.2 years ago
chelsey.ju
• 0
0
votes
0
replies
1.1k
views
Beta values and M values cluster differently
methylationEPIC
minfi
microarray
epigenetics
EPIC
5.1 years ago
rmf
▴ 20
0
votes
0
replies
823
views
Best normalisation method
microarray
methylationEPIC
epigenetics
minfi
EPIC
5.1 years ago
rmf
▴ 20
0
votes
0
replies
1.0k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
6.2 years ago
gabrielrfries
• 0
0
votes
0
replies
896
views
Error when changing the database for minfi dropLociWithSnps
minfi
methylationepic
illuminahumanmethylationepicanno.ilmn10b.hg19
SNP
6.8 years ago
Ellen O
• 0
11 results • Page
1 of 1
Recent ...
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Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM()
by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Votes
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
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Rory Stark
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tangming2005
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junhui.li11
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James W. MacDonald
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