Showing : methylumi • reset
1
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627
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Problems installing methylumi package
methylumi
updated 17 months ago by ★ 6.5k • written 17 months ago by • 0
0
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2
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1.1k
views
Convert MethyLumiSet into RGChannelSet (Illumina EPIC methylation data)
methylumi minfi microarray epic
4.1 years ago • updated 3.6 years ago Nala • 0
0
votes
0
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710
views
Error when trying to read in idat files in methylumi
methylumi 450k methylation methylome
4.3 years ago A ▴ 40
1
vote
1
reply
733
views
Valid to normalise MethylumiSet using minfi?
normalization minfi methylumi
updated 5.2 years ago by 65k • written 5.2 years ago by • 0
1
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2
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1.5k
views
lumi package fails to load because of a missing dependency (bumphunter)
lumi methylumi
updated 5.5 years ago by ▴ 50 • written 5.5 years ago by ▴ 30
2
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4
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2.7k
views
Problem in installing Bioconductor packages due to "IRanges"
lumi methylumi methyAnalysis
6.4 years ago topijush ▴ 10
1
vote
1
reply
971
views
Subsetting samples and columns of a MethyLumiSet subsets QC probes
methylumi
updated 6.5 years ago by 21k • written 6.5 years ago by ▴ 160
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1.3k
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Can't get the lumi and methylumi packages to work.
lumi methylumi
7.0 years ago gitteba • 0
0
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0
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1.3k
views
how to use Methylumi background correction (noob) in CHAMP
Methylumi NOOB CHAMP Background corection illimina 450k methylation
7.1 years ago rahel14350 ▴ 10
1
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10
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3.0k
views
minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.2 years ago by ▴ 180 • written 7.2 years ago by ▴ 10
0
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1
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1.5k
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MethylSet to MethyLumiSet
minfi methylumi watermelon
7.3 years ago Tom ▴ 10
0
votes
2
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1.4k
views
Error while using BMIQ normalisation on a methylumiSet
limma watermelon methylumi bmiq
updated 7.4 years ago by ▴ 10 • written 7.4 years ago by ▴ 10
0
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5
replies
2.1k
views
Is it possible to convert Methylumi object into RGChannelSet
microarray minfi methylumi illumina450k
7.5 years ago • updated 6.6 years ago poojitha.stemcell ▴ 10
1
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1
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1.3k
views
Filtering by bead count
methylumi
updated 8.2 years ago by ★ 6.5k • written 8.2 years ago by ▴ 400
4
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10
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4.5k
views
Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 8.2 years ago by ▴ 740 • written 8.2 years ago by ▴ 50
0
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6
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3.9k
views
Removing sex-chromosome probes from methyLumiSet
methylumi eSet illuminahumanmethylation450k.db featureFilter
updated 8.9 years ago by 65k • written 8.9 years ago by • 0
0
votes
7
replies
2.2k
views
methyAnalysis error
GO convert methylumi genoset GO convert methylumi genoset
10.5 years ago Juan Fernández Tajes ▴ 190
0
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10
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2.2k
views
MethyLumiM to MethyLumiSet?
convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon
updated 10.5 years ago by ★ 4.2k • written 10.5 years ago by ▴ 190
0
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0
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981
views
MethyLumiM to MethyLumiSet?
convert lumi methylumi convert lumi methylumi
10.6 years ago Allegra Petti ▴ 120
0
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2
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2.3k
views
Disparity between MethylLumiSet (methylumi) and RGChannelSet (minfi) - treatment of missing values
probe methylumi probe methylumi
updated 10.9 years ago by ★ 6.5k • written 10.9 years ago by ▴ 20
0
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1
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1.5k
views
problem with 'FDb.InfiniumMethylation.hg19'
BSgenome BSgenome lumi methylumi BSgenome BSgenome lumi methylumi
updated 10.9 years ago by ▴ 120 • written 10.9 years ago by 65k
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865
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[methylumi] concerning methylumi.bgcorr function and out-of-band intensities
methylumi methylumi
11.1 years ago Hannah Elliott ▴ 10
0
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0
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1.9k
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how to use MethyLumiM object in BMIQ(wateRmelon)
lumi methylumi lumi methylumi
11.1 years ago Guest User ★ 13k
0
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1
reply
1.3k
views
Question on Analyzing Illumina 450k methylation data
methylumi methylumi
11.2 years ago Srinivas Srikanth ▴ 70
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0
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951
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[methylumi] concerning methylumi.bgcorr function and out-of-band intensities
methylumi methylumi
11.4 years ago Dylan Aïssi ▴ 30
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0
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1.0k
views
Large datasets in methylumi
methylumi methylumi
11.4 years ago Guest User ★ 13k
0
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0
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1.0k
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methylumi on Infiniium27k idat files
methylumi methylumi
12.0 years ago Briggs, Chris ▴ 20
0
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0
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998
views
Bioconductor Digest, Vol 110, Issue 11
Normalization Cancer lumi methylumi Normalization Cancer lumi methylumi
12.1 years ago Pan Du ▴ 440
0
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1
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1.2k
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qcplot() error in methylumi?
methylumi methylumi
updated 12.2 years ago by ★ 4.2k • written 12.2 years ago by ▴ 10
0
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0
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1.8k
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reading with lumi
Preprocessing PROcess lumi methylumi Preprocessing PROcess lumi methylumi
12.2 years ago Tim Triche ★ 4.2k
0
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2
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2.9k
views
convert between MethylLumiSet (methylumi) and RGChannelSet (minfi)
methylumi minfi methylumi minfi
updated 12.3 years ago by ★ 4.2k • written 12.3 years ago by ▴ 170
0
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1
reply
1.2k
views
minfi
methylumi minfi methylumi minfi
updated 12.4 years ago by ★ 6.8k • written 12.4 years ago by ▴ 400
0
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0
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1.1k
views
Error in doing QC for 450K IlluminaHumanMeth data using methylumi
methylumi methylumi
12.5 years ago Shruti Rastogi ▴ 10
0
votes
3
replies
1.5k
views
'parallel' vs 'multicore'
methylumi methylumi
updated 12.6 years ago by 25k • written 12.6 years ago by ★ 4.2k
0
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2
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1.1k
views
memory problem
Normalization lumi methylumi Normalization lumi methylumi
updated 12.9 years ago by ▴ 620 • written 12.9 years ago by 21k
0
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0
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975
views
Results of QC of Demodata included in the package, HumMeth27QCReport
Normalization lumi methylumi Normalization lumi methylumi
13.5 years ago Francesco Mancuso ▴ 40
0
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3
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1.7k
views
Data from GEO in Methylumi
methylumi methylumi
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 90
0
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2
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1.3k
views
Cy5: methylated or unmethylated?
methylumi methylumi
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 720
0
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0
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985
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about normalizeMethyLumiSet
methylumi methylumi
13.7 years ago gregory voisin ▴ 430
0
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1
reply
1.1k
views
Illumina GoldenGate methylation array, methylumi
limma methylumi limma methylumi
updated 13.8 years ago by ▴ 350 • written 13.8 years ago by ▴ 10
0
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0
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836
views
methylumi: Quality Control
limma methylumi limma methylumi
13.9 years ago Jinyan Huang ▴ 50
0
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0
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1.1k
views
methylumiSet - normalization
methylumi methylumi
13.9 years ago Noemi Andor ▴ 100
0
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2
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1.2k
views
methylumi
Microarray methylumi Microarray methylumi
updated 14.3 years ago by 21k • written 14.3 years ago by ▴ 70
43 results • Page 1 of 1
Recent ...
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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