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methyAnalysis
•
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0
votes
0
replies
476
views
Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression
methyAnalysis
MethylationArray
2.9 years ago
coobzie
• 0
1
vote
2
replies
1.1k
views
Methylation data visualization using methyAnalysis with minfi
methylation
microarray
illumina
minfi
methyanalysis
updated 4.8 years ago by
Ou, Jianhong
★ 1.3k • written 4.8 years ago by
Adam_M
• 0
0
votes
0
replies
610
views
methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
5.6 years ago
mcahn
• 0
2
votes
4
replies
2.3k
views
Problem in installing Bioconductor packages due to "IRanges"
lumi
methylumi
methyAnalysis
5.7 years ago
topijush
▴ 10
0
votes
0
replies
697
views
Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
5.8 years ago
charleneee95
• 0
1
vote
9
replies
3.2k
views
strange results from differential methylation analysis using limma
limma
methylation
methyanalysis
IMA
updated 16 months ago by
Sean Davis
21k • written 6.5 years ago by
RC
• 0
0
votes
0
replies
853
views
methyAnalysis: heatmapByChromosome not works
methyAnalysis
7.0 years ago
Shicheng Guo
• 0
0
votes
1
reply
809
views
problem with identifySigDMR command
methyAnalysis
7.2 years ago • updated 7.1 years ago
yuping.zhang
• 0
0
votes
0
replies
1.6k
views
methyAnalysis error with example data
methyanalysis
7.3 years ago
Tom
▴ 10
4
votes
10
replies
4.1k
views
Illumina MethylationEPIC vs. 450K
methylumi
minfi
illuminahumanmethylation450k.db
450k
methyanalysis
updated 7.6 years ago by
Peter Hickey
▴ 650 • written 7.6 years ago by
Ahdee
▴ 50
1
vote
13
replies
1.9k
views
MethylAid package visualize function not opening a web browser
illimina 450k methylation
methyanalysis
methylaid
8.0 years ago
jdangelo
• 0
0
votes
1
reply
3.8k
views
methyAnalysis M values and Beta Values
methyAnalysis
methyanalysis
450k
updated 8.6 years ago by
Pan Du
▴ 80 • written 8.6 years ago by
andrew.j.skelton73
▴ 370
1
vote
5
replies
1.1k
views
Understanding methyAnalysis Results
methyAnalysis
methyanalysis
methylation
illuminahumanmethylation450k.db
updated 8.6 years ago by
Pan Du
▴ 80 • written 8.6 years ago by
andrew.j.skelton73
▴ 370
0
votes
0
replies
1.5k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
9.6 years ago
Allegra Petti
▴ 120
0
votes
8
replies
1.9k
views
methyAnalysis for DMR identification
convert
methyAnalysis
convert
methyAnalysis
updated 9.6 years ago by
Giovanni Calice
▴ 160 • written 9.6 years ago by
Guest User
★ 12k
0
votes
6
replies
2.7k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
updated 9.6 years ago by
James W. MacDonald
63k • written 9.6 years ago by
Guest User
★ 12k
0
votes
0
replies
1.5k
views
Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer
charm
minfi
methyAnalysis
Cancer
charm
minfi
methyAnalysis
10.6 years ago
Ed Schwalbe
▴ 20
0
votes
2
replies
1.1k
views
genoset:::initGenoSet
methyAnalysis
methyAnalysis
updated 10.6 years ago by
Pan Du
▴ 440 • written 10.6 years ago by
Schalkwyk, Leonard
▴ 20
0
votes
2
replies
1.6k
views
Loading Data into MethyAnalysis
Microarray
methyAnalysis
Microarray
methyAnalysis
updated 10.7 years ago by
Pan Du
▴ 440 • written 10.7 years ago by
Guest User
★ 12k
0
votes
1
reply
1.0k
views
methyAnalysis methyGenoSet function
methyAnalysis
methyAnalysis
updated 10.7 years ago by
Sean Davis
21k • written 10.7 years ago by
Giancarlo
▴ 10
0
votes
0
replies
1.0k
views
importing data problem with methyAnalysis package
Biophysics
Annotation
Preprocessing
annotate
lumi
methyAnalysis
Biophysics
Annotation
lumi
10.7 years ago
Pan Du
▴ 440
21 results • Page
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Recent ...
Replies
Comment: LIMMA dupcor() function time issue.
by
Gordon Smyth
48k
That's ok, but there is nothing to be gained by subsetting 1000 times. It would be better to simply subset 100,000 rows once, although the …
Comment: Specifying evidence channels in STRINGdb
by
robynne.braun
• 0
Also I found prior thread here addressing the same question with response that functionality will be supported someday. This was a few year…
Comment: Problems with FLOWAI
by
SHASHI
• 0
please try this using short path name and keeping your fcs file and wsp file in your local directory https://youtu.be/xLeqE7PNYzA
Comment: DataFrame Construction With Non-standard Column
by
Hervé Pagès
16k
SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…
Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
by
swbarnes2
★ 1.3k
The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…
Votes
Answer: Deseq2, enrichGO and ensembl ID
A: LIMMA dupcor() function time issue.
A: LIMMA dupcor() function time issue.
Answer: Further analysis after limma regression output
A: collapseReplicates in DESeq2
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