Showing : minfi • reset
0
votes
1
reply
44
views
minfi latest update for EPIC V2 chip
minfi minfiDataEPIC
updated 6 hours ago by 65k • written 12 hours ago by • 0
1
vote
4
replies
210
views
minfi::read.metharray.exp
minfiData minfi
updated 13 days ago by ▴ 780 • written 15 days ago by • 0
0
votes
4
replies
247
views
Minfi - estimatecellscount
min minfi
updated 8 days ago by 65k • written 5 weeks ago by • 0
0
votes
0
replies
198
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi minfiDataEPIC
8 weeks ago Felix • 0
0
votes
1
reply
182
views
Matrix multiplication error to estimate telomere length
methylclockData minfi methylclock minfidata
updated 9 weeks ago by 65k • written 9 weeks ago by • 0
0
votes
7
replies
463
views
error in reading idat files and creating rgset
minfi MethylationArray
updated 11 weeks ago by 65k • written 12 weeks ago by • 0
0
votes
2
replies
545
views
EPIC array hg38 annotation?
minfi DMRcate
12 weeks ago mycetes • 0
0
votes
0
replies
262
views
Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
4 months ago kyj2226 • 0
3
votes
2
replies
464
views
What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE CpG minfi CpGinterrogation
4 months ago kyj2226 • 0
2
votes
6
replies
1.4k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 4 weeks ago by ▴ 180 • written 5 months ago by ▴ 10
0
votes
1
reply
327
views
Error in reading my csv file in minfi
minfiDataEPIC minfi
updated 5 months ago by ▴ 780 • written 5 months ago by • 0
0
votes
2
replies
665
views
minfi differential methylation analysis errors
minfi
6 months ago matthew.sinton • 0
0
votes
5
replies
927
views
minfi, limma, adjusting for cell counts - integrating the resoults of estimateCellCounts into the linear regression model
minfi limma
6 months ago dorota.komar • 0
0
votes
3
replies
567
views
minfi bumphunter - probe IDs
minfi bumphunter
updated 7 months ago by ▴ 780 • written 7 months ago by • 0
0
votes
14
replies
1.9k
views
Error while preprocessing raw data from methylation array using minfi package
minfi
updated 3 months ago by • 0 • written 8 months ago by • 0
0
votes
1
reply
399
views
Two EPIC Methylation Array Analysis Questions
minfiDataEPIC minfi
updated 8 months ago by 65k • written 8 months ago by • 0
0
votes
3
replies
942
views
Batch correction using control probes in EPIC array data
RnBeads minfiData minfi EPICarray
updated 11 months ago by ▴ 780 • written 11 months ago by ▴ 10
0
votes
2
replies
572
views
ageData (minfi pipeline)
ageData missMethyl differentialvariability minfi
updated 6 weeks ago by • 0 • written 11 months ago by • 0
6
votes
5
replies
6.0k
views
minfi support of illumina Infinium methylationEPIC v2.0
methylationEPICv2.0 minfi
updated 6 months ago by ▴ 10 • written 13 months ago by ▴ 50
0
votes
9
replies
3.1k
views
clarification about bumphunter value output
minfi bumphunter
updated 11 months ago by • 0 • written 6.2 years ago by • 0
0
votes
11
replies
3.8k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
updated 3 months ago by ▴ 180 • written 7.1 years ago by ★ 2.0k
0
votes
2
replies
1.4k
views
Error processing Infinium 450K Methylation data using Minfi
minfi software error methylation illumina450k
updated 11 months ago by • 0 • written 8.4 years ago by • 0
22 results • Page 1 of 1
Recent ...
Replies
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Comment: Memory errors using read.bismark? by Juan Higareda • 0
Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…
Answer: meffil.snp.concordance by James W. MacDonald 65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to WouterDeCoster ▴ 130
Scholar to Michael Love 42k
Popular Question to Malcolm Cook ★ 1.6k
Popular Question to priyanka.m • 0
Locations • All
Norway, 6 minutes ago
United States, 9 minutes ago
United States, 12 minutes ago
United States, 31 minutes ago
Switzerland, 35 minutes ago
Traffic: 713 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6