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minfiDataEPIC
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How to perform a methylation analyisis from beta values matrix and pd.csv
minfiDataEPIC
4 months ago
yemeijie123
• 0
2
votes
2
replies
1.1k
views
minfi latest update for EPIC V2 chip
minfi
minfiDataEPIC
updated 5 weeks ago by
Aurora
• 0 • written 6 months ago by
e1271094
• 0
0
votes
0
replies
509
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi
minfiDataEPIC
8 months ago
Felix
• 0
0
votes
1
reply
628
views
Error in reading my csv file in minfi
minfiDataEPIC
minfi
updated 12 months ago by
Basti
▴ 780 • written 12 months ago by
Ana
• 0
0
votes
1
reply
748
views
Create design matrix for differential methylation analysis
Annotation
annotate
DifferentialMethylation
minfiDataEPIC
updated 14 months ago by
Basti
▴ 780 • written 14 months ago by
titangerd
• 0
0
votes
6
replies
2.5k
views
annotation EpicV2
minfiDataEPIC
EpicV2
updated 14 months ago by
Zuguang Gu
▴ 290 • written 15 months ago by
Izabela.ams
• 0
0
votes
1
reply
622
views
Two EPIC Methylation Array Analysis Questions
minfiDataEPIC
minfi
updated 15 months ago by
James W. MacDonald
67k • written 15 months ago by
phelankj
• 0
0
votes
1
reply
3.5k
views
Warning messages in detecting P-values
minfiDataEPIC
methylationArrayAnalysis
updated 16 months ago by
ATpoint
★ 4.5k • written 16 months ago by
rae.alshammari
▴ 10
0
votes
1
reply
723
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis
minfi
MethylationArrayData
minfiDataEPIC
MethylationArray
updated 19 months ago by
Gordon Smyth
51k • written 20 months ago by
Grace
• 0
0
votes
1
reply
1.3k
views
Density Plot using Noob Normalisation vs Quantile Normalisation
Quantile
noob
Normalization
minfi
minfiDataEPIC
updated 2.2 years ago by
James W. MacDonald
67k • written 2.2 years ago by
mikat
• 0
0
votes
1
reply
1.1k
views
EPIC ARRAY ANALYSIS
minfiDataEPIC
#SexPrediction
minfi
updated 3.1 years ago by
Basti
▴ 780 • written 3.1 years ago by
nucasa
• 0
1
vote
1
reply
2.5k
views
plotSex error message
minfiData
plotsex
minfi
minfiDataEPIC
r
updated 3.7 years ago by
suman
• 0 • written 3.7 years ago by
Bethan
• 0
0
votes
2
replies
2.2k
views
Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC
arrays
limma
minfi
Epigenetics
updated 4.0 years ago by
Gordon Smyth
51k • written 4.0 years ago by
Jeff
▴ 20
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Answer: Unlocking Potential: NURS FPX Strategies and Insights
by
efsane_kral2000
• 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights
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efsane_kral2000
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https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR
by
Gordon Smyth
51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data
by
Melisa Tecik
• 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data
by
James W. MacDonald
67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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