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updated 19 months ago by
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updated 24 months ago by
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updated 4.3 years ago by
Gordon Smyth
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written 4.4 years ago by
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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
by
Gordon Smyth
52k
We recommend that you use voomLmFit() instead of voom+lmFit.
We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
Answer: Merging EPICV1 and V2 betas
by
James W. MacDonald
68k
It appears that [SeSAMe][1] has functions meant to do that sort of thing.
[1]: https://bioconductor.org/packages/release/bioc/vignet…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species
by
Benjamin
▴
20
I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…
Answer: Error in cnetplot
by
Guido Hooiveld
★
4.1k
Unfortunately you did not show how you generated your input data (the object `enrichment`), nor did you show the output from `sessionInfo()…
Answer: getBM from biomaRt inconsistencies found with .gtf files across multiple species
by
Mike Smith
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6.6k
I think this is because Ensembl can assign different Gene IDs to "the same gene" if it is found both on a standard chromosome and a scaffol…
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