Bioconductor Mirna-seq

Showing : mirna-seq • reset

votes

replies

6.0k

views

deseq2 rnaseq mirna-seq differential gene expression

written 6.7 years ago by klalit1803 ▴ 10

votes

replies

1.2k

views

mirna-seq limma

updated 6.2 years ago by Gordon Smyth 51k • written 6.2 years ago by Michael Stone • 0

votes

replies

1.1k

views

mirna-seq

updated 6.4 years ago by Levi Waldron ★ 1.1k • written 6.4 years ago by ndiayediop2 • 0

vote

replies

893

views

mirna-seq

6.5 years ago • updated 6.4 years ago ndiayediop2 • 0

votes

replies

2.9k

views

r survival analysis rtcga tcgabiolinks mirna-seq

6.4 years ago atakanekiz ▴ 30

votes

824

views

deseq2 differentially expression mirna-seq mirna target prediction

updated 6.5 years ago by Michael Love 42k • written 6.5 years ago by Björn • 0

votes

replies

1.2k

views

DESeq2 mirna-seq small RNA-seq

updated 6.9 years ago by Michael Love 42k • written 6.9 years ago by CandiceChuDVM ▴ 40

vote

replies

4.7k

views

deseq2 mirna-seq experimental design differential expression

updated 7.5 years ago by Gavin Kelly ▴ 690 • written 7.5 years ago by francesco.gandolfi ▴ 10

votes

replies

4.9k

views

miRNA mirna-seq

updated 7.7 years ago by Jon Bråte ▴ 260 • written 7.7 years ago by just • 0

9 results • Page 1 of 1

Recent ...

Replies

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k

Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…

Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k

DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…

Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

Votes

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta

A: Some questions for remove batch effect by using mnnCorrect

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

Awards • All