Bioconductor Mirna-seq

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deseq2 rnaseq mirna-seq differential gene expression

written 7.1 years ago by klalit1803 ▴ 10

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1.3k

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mirna-seq limma

updated 6.6 years ago by Gordon Smyth 52k • written 6.6 years ago by Michael Stone • 0

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1.2k

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mirna-seq

updated 6.8 years ago by Levi Waldron ★ 1.1k • written 6.8 years ago by ndiayediop2 • 0

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947

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mirna-seq

6.9 years ago • updated 6.8 years ago ndiayediop2 • 0

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3.1k

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r survival analysis rtcga tcgabiolinks mirna-seq

6.8 years ago atakanekiz ▴ 30

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880

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deseq2 differentially expression mirna-seq mirna target prediction

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by Björn • 0

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1.3k

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DESeq2 mirna-seq small RNA-seq

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by CandiceChuDVM ▴ 40

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4.9k

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deseq2 mirna-seq experimental design differential expression

updated 7.9 years ago by Gavin Kelly ▴ 690 • written 7.9 years ago by francesco.gandolfi ▴ 10

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5.2k

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miRNA mirna-seq

updated 8.0 years ago by Jon Bråte ▴ 260 • written 8.1 years ago by just • 0

9 results • Page 1 of 1

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Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k

It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…

Answer: DESeq2 by ATpoint ★ 4.8k

Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k

Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…

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Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin

Comment: ComBat with repeated measures

Answer: Package developing and interoperation with Bioconductor

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

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