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mouse
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144
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Help with mouse cell type annotation
annotation
SingleR
mouse
SingleCellData
scRNAseq
9 weeks ago
Muhammad
• 0
0
votes
0
replies
824
views
TFutils database
TFutils
mouse
gene
convert
3.9 years ago
nicocillari
• 0
3
votes
4
replies
2.0k
views
AnnotationData package for Affymetrix HT MG-430 PM Array Plate
RNAseq
Affymetrix
Mouse
updated 4.5 years ago by
Guido Hooiveld
★ 4.1k • written 4.5 years ago by
olrema
• 0
1
vote
3
replies
2.8k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub
Ensembl
Mouse
AnnotationHub Ensembl
5.4 years ago
dmgatti
▴ 10
0
votes
3
replies
1.4k
views
Choosing DESeq2 design for mice experiment
deseq2
mouse
rnaseq
7.4 years ago
Emilie
• 0
0
votes
1
reply
2.1k
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 7.6 years ago by
Mike Smith
★ 6.6k • written 7.6 years ago by
julie.chevalier
• 0
6
votes
1
reply
8.0k
views
Finding orthologous human/mouse ENSEMBL IDs
human
mouse
ensembl
annotationdbi
homologue
7.9 years ago
Keith Hughitt
▴ 180
0
votes
1
reply
1.5k
views
Annotation for Mouse Illumina Expression Chip V6.1.1
bead chip
Annotation
Mouse
Lumi
probeID2nuID
updated 8.7 years ago by
Andy Lynch
▴ 120 • written 8.8 years ago by
smt8n
• 0
0
votes
0
replies
1.4k
views
News:
Ensembl release 82 is out!
biomart
ensembl
release82
variation
mouse
News
9.6 years ago
Thomas Maurel
▴ 800
5
votes
2
replies
3.2k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 9.8 years ago by
Sonali Arora
▴ 390 • written 9.8 years ago by
Thomas Maurel
▴ 800
10 results • Page
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Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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