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ncbi
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2
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3
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499
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NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio
cDNA
ensembldb
NCBI
5 months ago
R_Page
• 0
2
votes
5
replies
789
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio
convert
ensembldb
NCBI
6 months ago • updated 5 months ago
j_denton
• 0
0
votes
0
replies
636
views
getGFFSet function CRASHES R session
getGFF
NCBI
biomartr
biomaRt
2.7 years ago
Matan G.
▴ 60
2
votes
4
replies
1.0k
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI
NCBI
SQL
AnnotationForge
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
chefer
• 0
1
vote
5
replies
1.3k
views
Gene Ontology analysis
ontology
edger
limma
ncbi
organism package
updated 4.1 years ago by
Gordon Smyth
50k • written 4.1 years ago by
babak.loghmani
▴ 20
0
votes
4
replies
2.2k
views
Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread
ncbi
GRCh38
hg38
updated 7.5 years ago by
Wei Shi
★ 3.6k • written 7.5 years ago by
jan.soderman
• 0
0
votes
0
replies
1.4k
views
Search SRA based on BioSample Attributes
ncbi
sra
search
8.3 years ago
massacomgrao
• 0
8
votes
7
replies
3.5k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi
refseq
maketxdbfromgff
fetchExtendedChromInfoFromUCSC
genomeinfodb
updated 8.3 years ago by
Hervé Pagès
16k • written 8.3 years ago by
gokcen.eraslan
▴ 10
2
votes
2
replies
3.2k
views
How to Normalize the Microarray Data Obtained from ncbi?
microarray
normalization
ncbi
updated 9.0 years ago by
James W. MacDonald
65k • written 9.0 years ago by
pankajnarula84
▴ 20
0
votes
1
reply
1.3k
views
.getNcbiURL returns old NCBI url ?
annotate
ncbi
url
9.3 years ago
reuma
• 0
10 results • Page
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Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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