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nmf
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4.8k
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NMF installation with current R version
NMF
Biobase
updated 2.9 years ago by
shepherl
4.1k • written 2.9 years ago by
Abhishek
• 0
5
votes
5
replies
2.1k
views
Running NMF for single cell
NMF
scater
4.5 years ago
lirongrossmann
▴ 50
0
votes
0
replies
569
views
NMF in single cell analysis
NMF
ZeiselBrainData
4.7 years ago
sofia.puvogel
• 0
0
votes
0
replies
1.8k
views
Error in NMF estimation
MutationalPatterns
NMF
5.9 years ago
TRASA
• 0
0
votes
7
replies
3.7k
views
nmf function not working
somaticsignatures
NMF
updated 6.4 years ago by
Xin
• 0 • written 6.7 years ago by
aslam.mohammed398
• 0
0
votes
0
replies
1.0k
views
NMF pre-processsing effect on classification
NMF
log2
classification
bioconductor
6.8 years ago
Seymoo
• 0
0
votes
1
reply
1.3k
views
SomaticSignatures for Bioconductor 3.6 (R 3.4.3) depends on NMF, which is not available for R 3.4.3
NMF
somaticsignatures
R 3.4.3
updated 7.1 years ago by
shepherl
4.1k • written 7.1 years ago by
samuel.fux
• 0
0
votes
6
replies
3.6k
views
Somaticsignature NMF problem
somaticsignatures
NMF
updated 7.5 years ago by
grimmmmer
• 0 • written 8.1 years ago by
ns
• 0
0
votes
4
replies
2.8k
views
DESeq2, outlier correction, Combat, NMF
deseq2
combat
outliers
NMF
updated 7.8 years ago by
Michael Love
43k • written 7.8 years ago by
noname
• 0
0
votes
0
replies
1.3k
views
Defining metagenes from NMF in methylation array data - next step?
NMF
minfi
9.1 years ago
yura.grabovska
▴ 30
0
votes
2
replies
1.4k
views
coefmap plot - label colors
affy
coefmap
nmf
updated 9.2 years ago by
James W. MacDonald
68k • written 9.2 years ago by
thrabe
• 0
0
votes
1
reply
1.9k
views
SomaticSignatures: negative entries after ComBat adjustment
sva
somaticsignatures
batch effect
nmf
updated 9.3 years ago by
Jeff Leek
▴ 650 • written 9.3 years ago by
kw10
• 0
0
votes
1
reply
1.8k
views
NMF Package error
NMF
bioconductor
R
updated 9.7 years ago by
Martin Morgan
25k • written 9.7 years ago by
Deepak Tanwar
▴ 10
13 results • Page
1 of 1
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Comment: DESeq2 model - How to test case/control time course model when taking account wi
by
wuwenhui2
• 0
Thanks, I figured it out.
Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati
by
Mei
• 0
I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I a…
Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
by
Arctic
• 0
Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
by
Aaron Lun
★ 28k
It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…
Answer: DESeq2
by
ATpoint
★ 4.8k
Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …
Votes
Comment: plyranges: find exact GRanges match keeping metadata columns
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin
Comment: ComBat with repeated measures
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