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nmf
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2.9k
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NMF installation with current R version
NMF
Biobase
updated 23 months ago by
shepherl
3.9k • written 24 months ago by
Abhishek
• 0
5
votes
5
replies
1.7k
views
Running NMF for single cell
NMF
scater
3.6 years ago
lirongrossmann
▴ 40
0
votes
0
replies
417
views
NMF in single cell analysis
NMF
ZeiselBrainData
3.8 years ago
sofia.puvogel
• 0
0
votes
0
replies
1.4k
views
Error in NMF estimation
MutationalPatterns
NMF
5.0 years ago
TRASA
• 0
0
votes
7
replies
3.0k
views
nmf function not working
somaticsignatures
NMF
updated 5.5 years ago by
Xin
• 0 • written 5.8 years ago by
aslam.mohammed398
• 0
0
votes
0
replies
792
views
NMF pre-processsing effect on classification
NMF
log2
classification
bioconductor
5.9 years ago
Seymoo
• 0
0
votes
1
reply
1.1k
views
SomaticSignatures for Bioconductor 3.6 (R 3.4.3) depends on NMF, which is not available for R 3.4.3
NMF
somaticsignatures
R 3.4.3
updated 6.2 years ago by
shepherl
3.9k • written 6.2 years ago by
samuel.fux
• 0
0
votes
6
replies
2.8k
views
Somaticsignature NMF problem
somaticsignatures
NMF
updated 6.6 years ago by
grimmmmer
• 0 • written 7.2 years ago by
ns
• 0
0
votes
4
replies
2.4k
views
DESeq2, outlier correction, Combat, NMF
deseq2
combat
outliers
NMF
updated 6.9 years ago by
Michael Love
42k • written 6.9 years ago by
noname
• 0
0
votes
0
replies
1.2k
views
Defining metagenes from NMF in methylation array data - next step?
NMF
minfi
8.2 years ago
yura.grabovska
▴ 30
0
votes
2
replies
1.2k
views
coefmap plot - label colors
affy
coefmap
nmf
updated 8.3 years ago by
James W. MacDonald
65k • written 8.3 years ago by
thrabe
• 0
0
votes
1
reply
1.6k
views
SomaticSignatures: negative entries after ComBat adjustment
sva
somaticsignatures
batch effect
nmf
updated 8.4 years ago by
Jeff Leek
▴ 650 • written 8.5 years ago by
kw10
• 0
0
votes
1
reply
1.4k
views
NMF Package error
NMF
bioconductor
R
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
Deepak Tanwar
▴ 10
13 results • Page
1 of 1
Recent ...
Replies
Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results
by
swbarnes2
★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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