Showing : oligoClasses • reset
0
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3
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2.0k
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Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.8 years ago by • 0
2
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8
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1.5k
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pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses oligo pdInfoBuilder
3.5 years ago • updated 3.4 years ago efoss ▴ 10
2
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6
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4.2k
views
Can't install package oligoClasses
R oligoClasses ff
updated 4.3 years ago by ★ 4.0k • written 4.3 years ago by ▴ 20
2
votes
2
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2.3k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
6.5 years ago GENOMIC_region • 0
0
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7
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2.0k
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oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 7.4 years ago by 67k • written 7.4 years ago by ▴ 510
2
votes
1
reply
1.4k
views
Output of ArrayExpress() function
oligo oligoclasses arrayexpress
updated 7.9 years ago by 67k • written 7.9 years ago by • 0
2
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4
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1.6k
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getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo oligoclasses affy
updated 8.2 years ago by 67k • written 8.2 years ago by • 0
0
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2
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2.7k
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Cannot install Oligo package
oligo oligoclasses
8.4 years ago Anna Dvorkin ▴ 40
0
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2
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2.0k
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pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 9.6 years ago by ▴ 20 • written 10.9 years ago by ▴ 40
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Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo oligoClasses oligo oligoClasses
11.0 years ago Peter Crisp ▴ 10
0
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1
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1.7k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 11.0 years ago by 67k • written 11.0 years ago by ★ 13k
0
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8
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2.4k
views
vsn preprocess with oligo package
vsn oligo oligoClasses vsn oligo oligoClasses
updated 12.0 years ago by 67k • written 12.0 years ago by ▴ 110
0
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4
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2.9k
views
Problems with 'affxparser' package
oligoClasses oligoClasses
12.0 years ago Valor Becerra, Luis Miguel ▴ 30
3
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4
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1.9k
views
cause 'memory not mapped' when use oligo
oligo oligoClasses oligo oligoClasses
updated 12.2 years ago by ▴ 50 • written 12.2 years ago by ★ 1.3k
0
votes
4
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3.2k
views
Error : package slot missing from signature for generic
Biobase lumi oligoClasses Biobase lumi oligoClasses
12.4 years ago Mark Cowley ▴ 910
0
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2
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1.6k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation oligo pdInfoBuilder oligoClasses Annotation oligo pdInfoBuilder oligoClasses
updated 12.8 years ago by ★ 4.3k • written 12.8 years ago by ▴ 630
0
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0
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Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
15.6 years ago Min-Han Tan ▴ 40
0
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1
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1.1k
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Bioconductor Digest, Vol 68, Issue 7
oligo pdInfoBuilder oligoClasses oligo pdInfoBuilder oligoClasses
written 16.2 years ago by ▴ 70
18 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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