Showing : oligoClasses • reset
0
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3
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1.9k
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Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.7 years ago by • 0
2
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8
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1.4k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses oligo pdInfoBuilder
3.4 years ago • updated 3.3 years ago efoss ▴ 10
2
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6
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4.1k
views
Can't install package oligoClasses
R oligoClasses ff
updated 4.2 years ago by ★ 4.0k • written 4.2 years ago by ▴ 20
2
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2
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2.2k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
6.4 years ago GENOMIC_region • 0
0
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7
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2.0k
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oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 7.3 years ago by 67k • written 7.3 years ago by ▴ 510
2
votes
1
reply
1.4k
views
Output of ArrayExpress() function
oligo oligoclasses arrayexpress
updated 7.8 years ago by 67k • written 7.8 years ago by • 0
2
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4
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1.5k
views
getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo oligoclasses affy
updated 8.1 years ago by 67k • written 8.1 years ago by • 0
0
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2
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2.6k
views
Cannot install Oligo package
oligo oligoclasses
8.3 years ago Anna Dvorkin ▴ 40
0
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2
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2.0k
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pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0
BiocViews Annotation Organism biocViews oligo oligoClasses BiocViews BiocViews Annotation
updated 9.5 years ago by ▴ 20 • written 10.8 years ago by ▴ 40
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1.6k
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Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'
oligo oligoClasses oligo oligoClasses
10.9 years ago Peter Crisp ▴ 10
0
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1
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1.6k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 10.9 years ago by 67k • written 10.9 years ago by ★ 13k
0
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8
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2.3k
views
vsn preprocess with oligo package
vsn oligo oligoClasses vsn oligo oligoClasses
updated 11.9 years ago by 67k • written 11.9 years ago by ▴ 110
0
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4
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2.9k
views
Problems with 'affxparser' package
oligoClasses oligoClasses
11.9 years ago Valor Becerra, Luis Miguel ▴ 30
3
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4
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1.9k
views
cause 'memory not mapped' when use oligo
oligo oligoClasses oligo oligoClasses
updated 12.2 years ago by ▴ 50 • written 12.2 years ago by ★ 1.3k
0
votes
4
replies
3.2k
views
Error : package slot missing from signature for generic
Biobase lumi oligoClasses Biobase lumi oligoClasses
12.3 years ago Mark Cowley ▴ 910
0
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2
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1.5k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation oligo pdInfoBuilder oligoClasses Annotation oligo pdInfoBuilder oligoClasses
updated 12.7 years ago by ★ 4.3k • written 12.7 years ago by ▴ 630
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0
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Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
15.5 years ago Min-Han Tan ▴ 40
0
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1
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1.0k
views
Bioconductor Digest, Vol 68, Issue 7
oligo pdInfoBuilder oligoClasses oligo pdInfoBuilder oligoClasses
written 16.1 years ago by ▴ 70
18 results • Page 1 of 1
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Comment: [How to construct a model.matrix ] by kyj2226 • 0
Thanks to you, I learn a lot. Many thanks, Yujin.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
thank you for your advice, I posted separate post.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Votes
Answer: [How to construct a model.matrix ]
C: DESeq2 baseMean values for each sample
C: DESeq2 baseMean values for each sample
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
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