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Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
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Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
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Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
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The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
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Again, this is where you need to read the help page and try to diagnose. It says
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